1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACTTCTTGATAACAAGGAGAGTGGGGATACAACATGGCAGCATTTGATGGAACGTACCACTTCCAACATGACTTACAAGGCCTGGCGCCGTGAGCCTGAGgtatgttttccaatgggattgtaggaaagaaacagatgtcaaagtatatgtatagcgtgattgcgtaaatgattagagggccctgtattagaaataagtt...
species | Oryza sativa |
transcript | LOC_Os07g08760.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AACGTACCACTTCCAACATGACTTACAAGGCCTGGCGCCGTGAGCCTGAG GTGGGACCTATCATGTACTGTAGTCGCACTATTTTTGAGGATGCTACTCCTEST: gi|30226837|gb|CB964729.1|CB964729
genomic: AACGTACCACTTCCAACATGACTTACAAGGCCTGGCGCCGTGAGCCTGAGgtatgttttc ... ttgcttgtagGTGGGACCTATCATGTACTGTAGTCGCACTATTTTTGAGGATGCTACTCCT
EST: CTGGCGCCGTGAGCCTGAG GTGGGACCTATCATGTACTGTAGTCGCACTATTTTTGAGGATGCTACTCCTEST: gi|14981939|gb|BI306617.1|BI306617
genomic: CTGGCGCCGTGAGCCTGAGgtatgttttc ... ttgcttgtagGTGGGACCTATCATGTACTGTAGTCGCACTATTTTTGAGGATGCTACTCCT
EST: CAAGTGCCCGGCGCCCGTGAGCCCTGAG GTGGGACCTATCACTGTACTGTAGTCGCACCATTTTTGAGGATGCTACTCEST: gi|29659876|gb|CB656151.1|CB656151
genomic: CAAG-GCCTGGCG-CCGTGAG-CCTGAGgtatgttttc ... ttgcttgtagGTGGGACCTATCA-TGTACTGTAGTCGCACTATTTTTGAGGATGCTACTC
EST: AACGTACCACTTCCAACATGACTTACAAGGCCTGGCGCCGTGAGCCTGAG GTGGGACCTATCATGTACTGTAGTCGCACTATTTTTGAGGATGCTACTCCTEST: gi|30228065|gb|CB965957.1|CB965957
genomic: AACGTACCACTTCCAACATGACTTACAAGGCCTGGCGCCGTGAGCCTGAGgtatgttttc ... ttgcttgtagGTGGGACCTATCATGTACTGTAGTCGCACTATTTTTGAGGATGCTACTCCT
EST: CTGGCGCCGTGAGCCTGAG GTGGGACCTATCATGTACTGTAGTCGCACTATTTTTGAGGATGCTACTCCTEST: gi|23512848|gb|BU672864.1|BU672864
genomic: CTGGCGCCGTGAGCCTGAGgtatgttttc ... ttgcttgtagGTGGGACCTATCATGTACTGTAGTCGCACTATTTTTGAGGATGCTACTCCT
EST: GCCGTGAGCCTGAG GTGGGA-CTATCATGTACTGTAGTCGCACTATTTTTGAGGATGCTACTCCTEST: gi|30228719|gb|CB966609.1|CB966609
genomic: GCCGTGAGCCTGAGgtatgttttc ... ttgcttgtagGTGGGACCTATCATGTACTGTAGTCGCACTATTTTTGAGGATGCTACTCCT
EST: CTGGCGCCG-GAGCCTGAG GTGGGACCTATCATGTACTGTAGTCGCACTATTTTTGAGGATGCTACTCCT
genomic: CTGGCGCCGTGAGCCTGAGgtatgttttc ... ttgcttgtagGTGGGACCTATCATGTACTGTAGTCGCACTATTTTTGAGGATGCTACTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTCTTGATAACAAGGAGAGTGGGGATACAACATGGCAGCATTTGATGGAACGTACCACTTCCAACATGACTTACAAGGCCTGGCGCCGTGAGCCTGAGgtatgttttccaatgggattgtaggaaagaaacagatgtcaaagtatatgtatagcgtgattgcgtaaatgattagagggccctgtattagaaataagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaataa