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GAGAGGGAGGCCAACAAGGAGATGGTCGTCTACCTCATCGACGCCTCGCCCAAGATGTTCACCCCTGCGACCAAGgtgaaattccagcagcttcagcgcctaatttgataaatctctctgccctgtgcgagctcaagtgttgcaattagcgatggatattgggaatgggatgata...
species | Oryza sativa |
transcript | LOC_Os07g08729.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCGTCTACCTCATCGACGCCTCGCCCAAGATGTTCACCCCTGCGACCAAG GCAGATGAAAAGGAGGAGACACATTTTCATACGATAGTGAACTGCATCACAEST: gi|88356842|gb|CI619328.1|CI619328
genomic: TCGTCTACCTCATCGACGCCTCGCCCAAGATGTTCACCCCTGCGACCAAGgtgaaattcc ... tttattgcagGCAGATGAAAAGGAGGAGACACATTTTCATACGATAGTGAACTGCATCACA
EST: TCGTCTACCTCATCGACGCCTCGCCCAAGATGTTCACCCCTGCGACCAAG GCAGATGAAAAGGAGGAGACACATTTTCATACGATAGTGAACTGCATCACAEST: gi|88377289|gb|CI600444.1|CI600444
genomic: TCGTCTACCTCATCGACGCCTCGCCCAAGATGTTCACCCCTGCGACCAAGgtgaaattcc ... tttattgcagGCAGATGAAAAGGAGGAGACACATTTTCATACGATAGTGAACTGCATCACA
EST: TCGTCTACCTCATCGACGCCTCGCCCAAGATGTTCACCCCTGCGACCAAG GCAGATGAAAAGGAGGAGACACATTTTCATACGATAGTGAACTGCATCACAEST: gi|88364930|gb|CI614548.1|CI614548
genomic: TCGTCTACCTCATCGACGCCTCGCCCAAGATGTTCACCCCTGCGACCAAGgtgaaattcc ... tttattgcagGCAGATGAAAAGGAGGAGACACATTTTCATACGATAGTGAACTGCATCACA
EST: CGTCTACCTCATCGACGCCTCGCCCAAGATGTTCACCCCTGCCGACCAAG GCAGATGAAAAGGAGGAGACACATTTTCATACGATAGTGAACTGCATCAC
genomic: CGTCTACCTCATCGACGCCTCGCCCAAGATGTTCACCCCTGC-GACCAAGgtgaaattcc ... tttattgcagGCAGATGAAAAGGAGGAGACACATTTTCATACGATAGTGAACTGCATCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAGGGAGGCCAACAAGGAGATGGTCGTCTACCTCATCGACGCCTCGCCCAAGATGTTCACCCCTGCGACCAAGgtgaaattccagcagcttcagcgcctaatttgataaatctctctgccctgtgcgagctcaagtgttgcaattagcgatggatattgggaatgggatgata
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctgccc