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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCCCTGGTGGACTGACAGTTGCAGGCGTGTCCAAGTCGATTAAGTGTGACAAAGGGGAGCGGACGCGGTTCCGGTCCGATGTCCTGTCATTTCAGCAGgtacgtatcatatgcccaattcatatcttgtgtatactgcatattgccatgtttaagactgagaaatatatcgtaagatgctgtgtaaatgtatgctact...

Basic information

species Oryza sativa
transcript LOC_Os07g07194.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g07194.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G435034_T01 (Zea mays), 5'ss of exon 1
GCTCCCTGGTGGACTGACAGTTGCAGGCGTGTCCAAGTCGATTAAGTGTGACAAAGGGGAGCGGACGCGGTTCCGGTCCGATGTCCTGTCATTTCAGCAGgtacgtatcatatgcccaattcatatcttgtgtatactgcatattgccatgtttaa---gactg-agaaatatatcgtaagatgctgtgtaaa-tgtatgctact
||| || || ||  | || || || |||||  ||   ||| |||||||||||||||||||||||| | ||||||| |||||||||||||| || ||||||||  || || | |  |   ||  ||| |    |  ||| | ||| |    ||| |    || || |   ||| | | ||  ||        || || |       
GCTGCCCGGCGGCGTCACCGTCGCTGGCGTCACCGCTTCGGTTAAGTGTGACAAAGGGGAGCGGATGAGGTTCCGCTCCGATGTCCTGTCGTTCCAGCAGgtctgtttc-tgtttctgttttgtatatccatttcacttcttatggagtagttcatactgattgcatctatacaacatagaatatcaaccgaactggacat----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117247792|gb|CT848592.1|CT848592
EST:     ACAAAGGGGAGCGGACGCGGTTCCGGTCCGATGTCCTGTCATTTCAGCAG                         ATGTCGGAGCAATTCAACCAGGAATTATCTTTGTCTGGGAAAATTCCATCT
genomic: ACAAAGGGGAGCGGACGCGGTTCCGGTCCGATGTCCTGTCATTTCAGCAGgtacgtatca ... cattttgcagATGTCGGAGCAATTCAACCAGGAATTATCTTTGTCTGGGAAAATTCCATCT
EST: gi|58608642|gb|CK036675.1|CK036675
EST:     ACAAAGGGGAGCGGACGCGGTTCCGGTCCGATGTCCTGTCATTTCAGCAG                         ATGTCGGAGCAATTCAACCAGGAATTATCTTTGTCTGGGAAAATTCCATCT
genomic: ACAAAGGGGAGCGGACGCGGTTCCGGTCCGATGTCCTGTCATTTCAGCAGgtacgtatca ... cattttgcagATGTCGGAGCAATTCAACCAGGAATTATCTTTGTCTGGGAAAATTCCATCT