Sequence
atgc intronic sequence ATGC exonic sequenceGCAAAGATATGATTGGACGTGCAAGAACTGGAACTGGGAAAACGTTGGCTTTTGGTATTCCTATCATGGACAGGATTCTTCGTCACAATGAGAAGAATGGgttggtttcactttctcacctggaatttgttttatgtaattatcggacagatagaatttattgtgataatggtatagtttggtgcatgcag
Basic information
species | Oryza sativa |
transcript | LOC_Os07g05050.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os07g05050.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G080512_T01 (Zea mays), 5'ss of exon 2
GCAAAGATATGATTGGACGTGCAAGAACTGGAACTGGGAAAACGTTGGCTTTTGGTATTCCTATCATGGACAGGATTCTTCGTCACAATGAGAAGAATGGgttggtttcactttctcacctggaatttgttttatgtaattatcggacagatagaatttattgtgataatggtatagtttggtgcatgcag
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GAAAAGACATGATTGGCCGTGCTCGAACAGGGACTGGGAAGACCCTGGCTTTTGGTATTCCTATCATGGACAAGATCCTAAGCTACAACGAGAAGACTGGgttcgtttctctttcacatgtggaattcttttaatttatctaccagggagatagaatatattgtaataattgcatagtacgatgcatgcag
upper sequence: LOC_Os07g05050.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G407382_T02 (Zea mays), 5'ss of exon 2
GCAAAGATATGATTGGACGTGCAAGAACTGGAACTGGGAAAACGTTGGCTTTTGGTATTCCTATCATGGACAGGATTCTTCGTCACAATGAGAAGAATGGgttggtttcactttctcacctggaatttgttttatgtaattatcggacagatagaatttattgtgataatggtatagtttggtgcatgcag---------
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GAAAAGACATAATTGGCCGTGCTCGAACAGGGACTGGGAAGACCCTGGCTTTTGGTATTCCTATCATGGACAAGATCCTCAGCTACAACGAGAAGAATGGgttcgtttctctttcacatgtggaattcttttaatttatctaccagggagatataatatattgtaataattgcatagtacgaagcatgcagatttggcag
upper sequence: LOC_Os07g05050.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G407382_T01 (Zea mays), 5'ss of exon 2
GCAAAGATATGATTGGACGTGCAAGAACTGGAACTGGGAAAACGTTGGCTTTTGGTATTCCTATCATGGACAGGATTCTTCGTCACAATGAGAAGAATGGgttggtttcactttctcacctggaatttgttttatgtaattatcggacagatagaatttattgtgataatggtatagtttggtgcatgcag
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GAAAAGACATAATTGGCCGTGCTCGAACAGGGACTGGGAAGACCCTGGCTTTTGGTATTCCTATCATGGACAAGATCCTCAGCTACAACGAGAAGAATGGgttcgtttctctttcacatgtggaattcttttaatttatctaccagggagatataatatattgtaataattgcatagtacgaagcatgcag
upper sequence: LOC_Os07g05050.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA14G03760.1 (Glycine max), 5'ss of exon 2
GCAAAGATATGATTGGACGTGCAAGAACTGGAACTGGGAAAACGTTGGCTTTTGGTATTCCTATCATGGACAGGATTCTTCGTCACAATGAGAAGAATGGgttggtttcactttctcacctg--gaatttgttttatgtaattatcgg-acagatagaatttat----tgtgataatggtatagtttggtgcatgcag--------------------------------------------------------------------------------------
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GTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCTAAGCATGGgttagttctattcttttttttaatgatatcgtgatgcttatgtttcgctatcacttgaatttgtaacttgtttctctgcgtgagttaaaggtggactaggcaattgctattggtgtggatgaaatcatggaaaatattgatttgttttttaactgtgcaagtttttttgtggttgatgtggcag
upper sequence: LOC_Os07g05050.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA02G45030.1 (Glycine max), 5'ss of exon 2
GCAAAGATATGATTGGACGTGCAAGAACTGGAACTGGGAAAACGTTGGCTTTTGGTATTCCTATCATGGACAGGATTCTTCGTCACAATGAGAAGAATGGgttggtttcactttc---tcacctggaatttgttttatg-taattatcggacagatagaatttattgtgataatggtatagtttggtgcatgcag------------------------------------------------------------------------------------------------
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GTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATAAGGTCATTCAGTTTAATGCTAAGCATGGgttagttctatttttcttttttcttgttttgatatcgtgatgcttatttttcgctattacttgaatttgtaacttgtttctctgcgtgagttgaaggtggactaggtaattgatgttggtgtggatggaatcatggaaaaaattgatttgtttttttaactgtacaagtttttttgtggttgatgtggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29680607|gb|CB676882.1|CB676882EST: GACAGGATTCTTCGTCACAATGAGAAGAATGG GAGTGGTAGAAATCCTTTAGCCATAATTCTCGCACCTACTAGAGAACTTGC
genomic: GACAGGATTCTTCGTCACAATGAGAAGAATGGgttggtttca ... gtgcatgcagGAGTGGTAGAAATCCTTTAGCCATAATTCTCGCACCTACTAGAGAACTTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAAAGATATGATTGGACGTGCAAGAACTGGAACTGGGAAAACGTTGGCTTTTGGTATTCCTATCATGGACAGGATTCTTCGTCACAATGAGAAGAATGGgttggtttcactttctcacctggaatttgttttatgtaattatcggacagatagaatttattgtgataatggtatagtttggtgcatgcag
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