1 5' 3' | 2 5' 3' | 3 5' 3' |
GCCGCCACCACGACGACGACGACGAGGAGGTCGCCAAGGCGCACGAGCCCACCAGCCTCGCCTCGTACGGCCTCTCCATCTCGCCGCTCTCCAAGgtacagtacgattcgatacgaaccctcactccctccattccattcctcgacctgtggaccgatccgatatgctttattaatttgttcctttcttcaccgc...
species | Oryza sativa |
transcript | LOC_Os06g50870.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCCCACCAGCCTCGCCTCGTACGGCCTCTCCATCTCGCCGCTCTCCAAG GATGCGGCCATGGGGCTGGTGGTGAGCGCCGCCACGGGGAGGGGCTGGACGEST: gi|88764396|gb|CI773514.1|CI773514
genomic: AGCCCACCAGCCTCGCCTCGTACGGCCTCTCCATCTCGCCGCTCTCCAAGgtacagtacg ... tcatctgcagGATGCGGCCATGGGGCTGGTGGTGAGCGCCGCCACGGGGAGGGGCTGGACG
EST: AGCCCACCAGCCTCGCCTCGTACGGCCTCTCCATCTCGCCGCTCTCCAAG GATGCGGCCATGGGGCTGGTGGTGAGCGCCGCCACGGGGAGGGGCTGGACGEST: gi|86498184|gb|CI140817.1|CI140817
genomic: AGCCCACCAGCCTCGCCTCGTACGGCCTCTCCATCTCGCCGCTCTCCAAGgtacagtacg ... tcatctgcagGATGCGGCCATGGGGCTGGTGGTGAGCGCCGCCACGGGGAGGGGCTGGACG
EST: CATCTCGCCGCTCTCCAAG GATGCGCCCATGGGGCTGCTGGTGAGCGCCGCCACGGGGAGGGGCTGGACG
genomic: CATCTCGCCGCTCTCCAAGgtacagtacg ... tcatctgcagGATGCGGCCATGGGGCTGGTGGTGAGCGCCGCCACGGGGAGGGGCTGGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGCCACCACGACGACGACGACGAGGAGGTCGCCAAGGCGCACGAGCCCACCAGCCTCGCCTCGTACGGCCTCTCCATCTCGCCGCTCTCCAAGgtacagtacgattcgatacgaaccctcactccctccattccattcctcgacctgtggaccgatccgatatgctttattaatttgttcctttcttcaccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcgacc