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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGTTCCTGCTGGGCCTCAGCTTCACCAACGCCTCCTACGCCGCAGCCTTCCAGCCAGCCATACCGGTGTTCACATTCCTCCTAGCCGCAATCGTCGGgtaaaattggttcatgatttggaaaattatctactcctgatgttgcattggcttcaaatttcaactgaattgagtgaaattacgcgtgttgcag

Basic information

species Oryza sativa
transcript LOC_Os06g49500.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g49500.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G134930_T01 (Zea mays), 5'ss of exon 3
TCCTGTTCCTGCTGGGCCTCAGCTTCACCAACGCCTCCTACGCCGCAGCCTTCCAGCCAGCCATACCGGTGTTCACATTCCTCCTAGCCGCAATCGTCGGgtaaaattgg----------ttcatgatttggaaaattatctact-cctgatgttg--cattggcttcaaatttcaactgaattgagtgaaattacgcgt---gttgcag
|||| ||||| ||||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||| |||||||||||||||||| | | |          |   |  | ||  |       | || |||||  | |  |   | |  |        | | ||||      | || | | |    || |||
TCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCCTCCTACGCCGCGGCGTTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGGgtaacactcggaaccttccttctctcgtctgacagcccgagtccttcctgacatggaccgacgccgccgccgccgcaataaattccacacattttcccatccaattccag