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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGAGTGCGAGGCCGACGCCGTGGCCGGGAGATTCCCGGCTCCCCCGCCGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccccaatggatggatttgcaatgtcgtttgtggtttgtggtatgatttcagaggactgaattttggacctgtttgatgtgtgttcag

Basic information

species Oryza sativa
transcript LOC_Os06g49110.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29681115|gb|CB677390.1|CB677390
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29616370|gb|CB621382.1|CB621382
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACATGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29655802|gb|CB652077.1|CB652077
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|88411271|gb|CI564392.1|CI564392
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29645008|gb|CB650015.1|CB650015
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29619108|gb|CB624120.1|CB624120
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACATGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29643724|gb|CB648731.1|CB648731
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|88426580|gb|CI579409.1|CI579409
EST:     CGTTGGTCATACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29660427|gb|CB656702.1|CB656702
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29617546|gb|CB622558.1|CB622558
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACATGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|88730951|gb|CI754564.1|CI754564
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCT
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCT
EST: gi|29637541|gb|CB642550.1|CB642550
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29621569|gb|CB626580.1|CB626580
EST:     GGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACATGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: GGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29673911|gb|CB670186.1|CB670186
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29619411|gb|CB624423.1|CB624423
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACATGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29679002|gb|CB675277.1|CB675277
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|88301073|gb|CI594599.1|CI594599
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAAGCGCAGGTCGCCTG
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTG
EST: gi|88370758|gb|CI592524.1|CI592524
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCC
EST: gi|29672090|gb|CB668365.1|CB668365
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|88387378|gb|CI582896.1|CI582896
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|27554097|gb|CA997997.1|CA997997
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCT
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCT
EST: gi|88422647|gb|CI573809.1|CI573809
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGC-
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29667711|gb|CB663986.1|CB663986
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29641133|gb|CB646140.1|CB646140
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|88362048|gb|CI607048.1|CI607048
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGG
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGG
EST: gi|29661434|gb|CB657709.1|CB657709
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|66928178|gb|CX115026.1|CX115026
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACATGACAAAGCGCCCTCGTCGCAACCGCAGGTCGGCTGCTCTTAGGGGC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29638674|gb|CB643683.1|CB643683
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29681299|gb|CB677574.1|CB677574
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|88377413|gb|CI602898.1|CI602898
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATTAGGGCTCTT                         GAGTTGACAAA
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAA
EST: gi|700999|gb|D47290.1|D47290
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAG-AACAACTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGNAG-TCGCCTGCTTCTTAGGGC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCT-CTTAGGGC
EST: gi|86902073|gb|CI300312.1|CI300312
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCG
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCG
EST: gi|88360295|gb|CI612014.1|CI612014
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGA-AAAGCGCCCTCGTCGC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGC
EST: gi|58679478|gb|CK068165.1|CK068165
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACATGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29687455|gb|CB683730.1|CB683730
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|58671309|gb|CK059995.1|CK059995
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACATGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|88694918|gb|CI738956.1|CI738956
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGC
EST: gi|88729601|gb|CI751404.1|CI751404
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGGTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29682583|gb|CB678858.1|CB678858
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29641824|gb|CB646831.1|CB646831
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29666981|gb|CB663256.1|CB663256
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29619315|gb|CB624327.1|CB624327
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACATGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|58612032|gb|CK039744.1|CK039744
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACATGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29615586|gb|CB620598.1|CB620598
EST:     CGTTGGTCAGACCCAAGGCTCCCGAATGAACTCCTCAAATCAGGCCTCTT                         GACATGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|58606899|gb|CK034932.1|CK034932
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACATGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29688148|gb|CB684423.1|CB684423
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29637162|gb|CB642171.1|CB642171
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
EST: gi|29660273|gb|CB656548.1|CB656548
EST:     CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTT                         GACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC
genomic: CGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 74 (downstream exon)
Score: 88

CGAGGAGTGCGAGGCCGACGCCGTGGCCGGGAGATTCCCGGCTCCCCCGCCGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccc ... gtgtgttcagGACTTGACAAAGCGCCCTCGTCGCAACCGCAGGTCGCCTGCTCTTAGGGCCGCATTCCAGGAGACCACCATCTCACCTGCCAATTTGGTGCTCCCGCTGT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAGGAGTGCGAGGCCGACGCCGTGGCCGGGAGATTCCCGGCTCCCCCGCCGTTGGTCAGACCCAAGGCTCCCGAAGGAACACCTCAGATCAGGCCTCTTgtaagccccccaatggatggatttgcaatgtcgtttgtggtttgtggtatgatttcagaggactgaattttggacctgtttgatgtgtgttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA