Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatcttatactgatacgttttatctcagccatcattgtgtacggcaatgtctgtctatttcctgtacaggatctaccgcttactgggtagtcttttaatgcag

Basic information

species Oryza sativa
transcript LOC_Os06g48750.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g48750.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G116034_T01 (Zea mays), 5'ss of exon 2
TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatcttatactgatacgtt---ttatctcagccatcattgtgta-cggcaatgtct----gtctatttcctgtacaggatctaccgcttactgggtagtcttttaatgcag
         |||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||| | |  ||      ||   || | | | | |    ||| || |  |  || ||      | |  |  |    |  | |     ||| ||   |  |  | |||| |||
---------GAATGGCACCTGAGGGTTCTCAGTTCGATGCTAAGCACTATGATTCTAAGATGCAGGAGCTGCTgtaagtaatatgaacctttctttttaaatttttttacctacttgtgtttatcatctttgacttgagagccaagtgatacctaataacctttactt-ctatatgtttatgtaatacag

upper sequence: LOC_Os06g48750.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G027995_T01 (Zea mays), 5'ss of exon 2
TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatcttatactgatacgttttatctcagccatcattgtgtacggcaatgtctgtctatttcctgtacaggatctaccg-ctta-----ctgggtagtcttttaatgcag
||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |||     | | || | ||| |    |  | |   ||  |     |   | | |   ||      |   ||||||    | ||     ||   |  || | ||||||||
TCATGGCAGGAATGGCACCCGAGGGTTCTCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTGCTgtaagtaata----aatcattcttttaaaaaaacacttacctgcttgttttaccatttctgacttggagccaagtgatctaataacctatacctctatatgatcatgtaatgcag

upper sequence: LOC_Os06g48750.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G116034_T02 (Zea mays), 5'ss of exon 2
TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatcttatactgatacgtt---ttatctcagccatcattgtgta-cggcaatgtct----gtctatttcctgtacaggatctaccgcttactgggtagtcttttaatgcag
||||||| ||||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||| | |  ||      ||   || | | | | |    ||| || |  |  || ||      | |  |  |    |  | |     ||| ||   |  |  | |||| |||
TCATGGCAGGAATGGCACCTGAGGGTTCTCAGTTCGATGCTAAGCACTATGATTCTAAGATGCAGGAGCTGCTgtaagtaatatgaacctttctttttaaatttttttacctacttgtgtttatcatctttgacttgagagccaagtgatacctaataacctttactt-ctatatgtttatgtaatacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58687017|gb|CK075704.1|CK075704
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|29681409|gb|CB677684.1|CB677684
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|58662423|gb|CK051109.1|CK051109
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|58670875|gb|CK059561.1|CK059561
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|58692318|gb|CK081005.1|CK081005
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|29617450|gb|CB622462.1|CB622462
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|27554015|gb|CA997915.1|CA997915
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGATCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGT
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|218497636|gb|FG960442.1|FG960442
EST:     GGATCCCAG-TTGATGCTAAGCACTATGA-TCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAG-TCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|88696339|gb|CI739914.1|CI739914
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|29634490|gb|CB639499.1|CB639499
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|29618198|gb|CB623210.1|CB623210
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|58685069|gb|CK073756.1|CK073756
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|58694481|gb|CK083168.1|CK083168
EST:     CTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: CTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|29666501|gb|CB662776.1|CB662776
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTGATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|58681442|gb|CK070129.1|CK070129
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|58659178|gb|CK047858.1|CK047858
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|29681779|gb|CB678054.1|CB678054
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|56158541|gb|AU094758.2|AU094758
EST:     GGATCCCAGTTTGATGCTAAGCAC--TCATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGATGGAGTTCTTCACATCTTATGATGAAGTTCATG
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGA-GGAGTTCTTCACATCTTATGATGAAGTTCATG
EST: gi|58652969|gb|CK041649.1|CK041649
EST:     GGATCCCAGTTNGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|29657788|gb|CB654063.1|CB654063
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|29617425|gb|CB622437.1|CB622437
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|86891788|gb|CI310020.1|CI310020
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|58596902|gb|CK007430.1|CK007430
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCAGGTGCTTATGATGAAGTTCATG
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACAT-CTTATGATGAAGTTCATG
EST: gi|29683861|gb|CB680136.1|CB680136
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|29687377|gb|CB683652.1|CB683652
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|58690915|gb|CK079602.1|CK079602
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|29657751|gb|CB654026.1|CB654026
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|58660365|gb|CK049045.1|CK049045
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|58677625|gb|CK066312.1|CK066312
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|58662665|gb|CK051351.1|CK051351
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|58608944|gb|CK036977.1|CK036977
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|58657174|gb|CK045854.1|CK045854
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGAGGGGGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|29664636|gb|CB660911.1|CB660911
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|218485882|gb|FG950582.1|FG950582
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|86829570|gb|CI286756.1|CI286756
EST:     AGCACTATG--TCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: AGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|58686621|gb|CK075308.1|CK075308
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|29666236|gb|CB662511.1|CB662511
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
EST: gi|29666235|gb|CB662510.1|CB662510
EST:     GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCT                         GAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA
genomic: GGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 213

TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatc ... tttaatgcagGAACCAAGGTGAAACCGAGGAGTTCTTCACATCTTATGATGAAGTTCATGAGAGTTTTGATGACATGGGTCTCCAAGAGAACCTTCTCAGAGGCATCTAT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCATGGCGGGAATGGCACCAGAGGGATCCCAGTTTGATGCTAAGCACTATGATTCTAAAATGCAGGAGCTTCTgtaaggaatcttatactgatacgttttatctcagccatcattgtgtacggcaatgtctgtctatttcctgtacaggatctaccgcttactgggtagtcttttaatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT