1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCGCTCACCCTTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgctttcatcagagatctgacttatgcccatgtttcttttgcgaatcatttttggaaatttggaccaaggttgggtgttactactggcattca...
species | Oryza sativa |
transcript | LOC_Os06g45660.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|88736487|gb|CI759995.1|CI759995
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|218505045|gb|FG968801.1|FG968801
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|88575049|gb|CI666818.1|CI666818
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|88572461|gb|CI664032.1|CI664032
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|38477525|gb|CF961658.1|CF961658
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|58596640|gb|CK007168.1|CK007168
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAAGGAAGAAGCTGCTGCTAAAGCEST: gi|88347703|gb|CI655056.1|CI655056
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|33822248|gb|CF336938.1|CF336938
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|38475488|gb|CF959621.1|CF959621
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: GCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCGGCATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|38475613|gb|CF959746.1|CF959746
genomic: GCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGC-TCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|88334078|gb|CI641129.1|CI641129
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|33689070|gb|CF317309.1|CF317309
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|25797786|gb|CA753747.1|CA753747
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGGCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|55414604|gb|CV726980.1|CV726980
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|55414535|gb|CV726911.1|CV726911
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|38481086|gb|CF965175.1|CF965175
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|163925430|gb|EG713343.1|EG713343
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|88382349|gb|CI633207.1|CI633207
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|33657720|gb|CF280334.1|CF280334
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|24208483|gb|AU225510.1|AU225510
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|88345287|gb|CI655747.1|CI655747
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|88376801|gb|CI639126.1|CI639126
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|33823879|gb|CF337751.1|CF337751
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|33656833|gb|CF279447.1|CF279447
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|88380875|gb|CI634900.1|CI634900
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|11442620|gb|BF430523.1|BF430523
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|88308825|gb|CI654108.1|CI654108
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGNTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|55435458|gb|CV730859.1|CV730859
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTC-CTCCCCATAG -TTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|33815380|gb|CF333544.1|CF333544
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAAGCTGCTGCTAAAGEST: gi|33659581|gb|CF282194.1|CF282194
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAA-GCTGCTGCTAAAG
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|88736146|gb|CI759654.1|CI759654
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|88361022|gb|CI646046.1|CI646046
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|112785873|gb|EE591589.1|EE591589
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCGAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGCEST: gi|88586835|gb|CI704555.1|CI704555
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
EST: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAG ATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
genomic: TTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgc ... tttcctccagATTTGTGCGCCACATTGCTTCATCGACAAATGAAGAAGCTGCTGCTAAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCTCACCCTTGCTGCGGCCTCACGGTCTCCGACTCTCCCGCCGCTTCGCTCCCCAAAGgtgtggccgctttcatcagagatctgacttatgcccatgtttcttttgcgaatcatttttggaaatttggaccaaggttgggtgttactactggcattca
- - - - - TGCTGC