Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCGCCTCCATCCGCATGGTTATGTCCGGCGCCGCCCCCATGGGGAAGGACCTCCAGGACGCCTTCATGGCCAAGATCCCCAACGCCGTCCTGGGACAGgtgatccgctcaaactaatatgcccttcacacactgatccattcaattcccttccccaattcctaaattatagcgtatgcttatttgtctctcttattaa...

Basic information

species Oryza sativa
transcript LOC_Os06g44620.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g44620.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G055320_T02 (Zea mays), 5'ss of exon 2
CCTCGCCTCCATCCGCATGGTTATGTCCGGCGCCGCCCCCATGGGGAAGGACCTCCAGGACGCCTTCATGGCCAAGATCCCCAACGCCGTCCTGGGACAGgtg-atccgctcaaactaatatgcccttcacacactgatc-cattcaattcccttccccaattcctaaattatagcgta-tgcttatttgtctctcttattaa
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |||||   | ||| |   | |  || | |  |||    | | | |  |  |        |  ||| ||    |  |     | ||| | |   | ||     |   
CCTCGCCTCCATCCGCATGGTCATGTCCGGCGCCGCGCCCATGGGGAAGGACCTCCAGGACGCGTTCATGGCCAAGATCCCCAACGCCGTGCTCGGCCAGgtctgttcgcgccccccacaatcctccacacctcgtaaccacgcttcacgaatcaacgaaatgccggtttcgtgattaagtgcatgtgcatgtccacagt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86498344|gb|CI140977.1|CI140977
EST:     ACCTCCAGGACGCCTTCATGGCCAAGATCCCCAACGCCGTCCTGGGACAG                         GGGTATGGGATGACTGAGGCTGGACCTGTGCTGGCCATGTGTCTGGCCTTC
genomic: ACCTCCAGGACGCCTTCATGGCCAAGATCCCCAACGCCGTCCTGGGACAGgtgatccgct ... tttctgacagGGGTATGGGATGACTGAGGCTGGACCTGTGCTGGCCATGTGTCTGGCCTTC