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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGCAGGAAGCTGAGGGACACGGAGTTCTTCACGCGGCAGGATCCCTACGTCTGCATCGAGTATGCCACCAACAAGTTCCGCACCCGCACCTGCACCGgtaaagccccctctccatcttgttagtgctttgagctgtgaatcgtgaataaacccgagttcggtagcggcaatccaggaagaaccgctagggttttgag...

Basic information

species Oryza sativa
transcript LOC_Os06g43190.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g43190.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G704277_T01 (Zea mays), 5'ss of exon 2
GGGTGCAGGAAGCTGAGGGACACGGAGTTCTTCACGCGGCAGGATCCCTACGTCTGCATCGAGTATGCCACCAACAAGTTCCGCACCCGCACCTGCACCGgta---aagccccctctccatcttgttagtgctttgagctgtgaatcgtgaataaacccgagttcggtagcggcaatccaggaagaaccgctagggttttgag
|||||| |||||||| ||||||||||||||||||| || ||||| |||||||||  | ||||||| ||||||| |||| ||||||| |||||||||||||||    || |||||||| | |         ||   |  |   || || |   |  ||   |  |     ||  ||||              |    | | || 
GGGTGCCGGAAGCTGCGGGACACGGAGTTCTTCACCCGCCAGGACCCCTACGTCGTCGTCGAGTACGCCACCACCAAGCTCCGCACTCGCACCTGCACCGgttcgtaacccccctcttccttcctcggccgccccggcc---gagtcttcgctgcactaaacgtgcactgcttcaattgttttcatttttttgttatgtggac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40488146|gb|BX898747.1|BX898747
EST:     CGTCTGCATCGAGTATGCCACCAACAAGTTCCGCACCCGCACCTGCACCG                         ATGGGGGAAGGAACCCTACTTTTGACGAGAAGTTTCATATACCTCTCATTG
genomic: CGTCTGCATCGAGTATGCCACCAACAAGTTCCGCACCCGCACCTGCACCGgtaaagcccc ... tttctgccagATGGGGGAAGGAACCCTACTTTTGACGAGAAGTTTCATATACCTCTCATTG