1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGCAGAGTACAATCCAGATCAGTATCTGTGGGAACCGGAGTTTACTCTTGCGGGAAGAAAGTACAAACGAATAGATTTGGAGgcaagtaaggggagctttttaaggccttctttctctttcatttgttgaagaaaaaatcacccttttactatatattagccttattctgttacttgtatatggcag
species | Oryza sativa |
transcript | LOC_Os06g40730.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AACCGGAGTTTACTCTGGCGGGAAGAAAGTACAAACGAATAGATTTGGAG CTTACGAACGGAAGAGACCAGACCTTAAAATGCAGCCACTATGTTCCTGCTEST: gi|33676219|gb|CF304458.1|CF304458
genomic: AACCGGAGTTTACTCTTGCGGGAAGAAAGTACAAACGAATAGATTTGGAGgcaagtaagg ... tatatggcagCTTACGAACGGAAGAGACCAGACCTTAAAATGCAGCCACTATGTTCCTGCT
EST: AACCGGAGTTTACTCTTGCGGGAAGAAAGTACAAACGAATAGATTTGGAG CTTACGAACGGAAGAGACCAGACCTTAAAATGCAGCCACTATGTTCCTGCTEST: gi|29680364|gb|CB676639.1|CB676639
genomic: AACCGGAGTTTACTCTTGCGGGAAGAAAGTACAAACGAATAGATTTGGAGgcaagtaagg ... tatatggcagCTTACGAACGGAAGAGACCAGACCTTAAAATGCAGCCACTATGTTCCTGCT
EST: AACCGGAGTTTACTCTTGCGGGAAGAAGGTACCAACGAATAGATTTGGAG CTTACGAACGGAAGAGACCAGACCTTAAAATGCAGCCACTATGTTCCTGCTEST: gi|58653788|gb|CK042468.1|CK042468
genomic: AACCGGAGTTTACTCTTGCGGGAAGAAAGTACAAACGAATAGATTTGGAGgcaagtaagg ... tatatggcagCTTACGAACGGAAGAGACCAGACCTTAAAATGCAGCCACTATGTTCCTGCT
EST: CGGAGTTTACTCTNTGCGGGAAGAAAGTACAAACGAATAGATTTGGGGAG CTTACGAACGGAAGAGACCEST: gi|58671343|gb|CK060029.1|CK060029
genomic: CGGAGTTTACTCT-TGCGGGAAGAAAGTACAAACGAATAGATTTGG--AGgcaagtaagg ... tatatggcagCTTACGAACGGAAGAGACC
EST: AACCGGAGTTTACTCTTGCGGGAAGAAAGTACAAACGAATAGATTTGGAG CTTACGAACGGAAGAGACCAGACCTTAAAATGCAGCCACTATGTTCCTGCTEST: gi|58668348|gb|CK057034.1|CK057034
genomic: AACCGGAGTTTACTCTTGCGGGAAGAAAGTACAAACGAATAGATTTGGAGgcaagtaagg ... tatatggcagCTTACGAACGGAAGAGACCAGACCTTAAAATGCAGCCACTATGTTCCTGCT
EST: AACCGGAGTTTACTCTTGCGGGAAGAAAGTACAAACGAATAGATTTGGAG CTTACGAACGGAAGAGACCAGACCTTAAAATGCAGCCACTATGTTCCTGCTEST: gi|58668855|gb|CK057541.1|CK057541
genomic: AACCGGAGTTTACTCTTGCGGGAAGAAAGTACAAACGAATAGATTTGGAGgcaagtaagg ... tatatggcagCTTACGAACGGAAGAGACCAGACCTTAAAATGCAGCCACTATGTTCCTGCT
EST: AACCGGAGTTTACTCTTGCGGGAAGAAAGT-GAAACGAATAGATTTGGAG CTTACGAACGGAAGAGACCAGACCTTAAAATGCAGCCACTATGTTCCTGCTEST: gi|24208835|gb|AU225862.1|AU225862
genomic: AACCGGAGTTTACTCTTGCGGGAAGAAAGTACAAACGAATAGATTTGGAGgcaagtaagg ... tatatggcagCTTACGAACGGAAGAGACCAGACCTTAAAATGCAGCCACTATGTTCCTGCT
EST: AACCGGAGTTTACTCTTGCGGGAAGAAAGTACAAACGAATAGATTTGGAG CTTACGAACGGAAGAGACCAGACCTTAAAATGCAGCCACTATGTTCCTGCT
genomic: AACCGGAGTTTACTCTTGCGGGAAGAAAGTACAAACGAATAGATTTGGAGgcaagtaagg ... tatatggcagCTTACGAACGGAAGAGACCAGACCTTAAAATGCAGCCACTATGTTCCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAGAGTACAATCCAGATCAGTATCTGTGGGAACCGGAGTTTACTCTTGCGGGAAGAAAGTACAAACGAATAGATTTGGAGgcaagtaaggggagctttttaaggccttctttctctttcatttgttgaagaaaaaatcacccttttactatatattagccttattctgttacttgtatatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG