1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCGCACGGGACTTCACTCAAGTCGTTCGATAGCATCATCATGAAGTTTCCGAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCGgtgagattcgtcatgctgtctgcatgccaatcattgtctaattacctgattatctcctacttttggatctcactgctagtgagattcagtagagatcttc...
species | Oryza sativa |
transcript | LOC_Os06g40720.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCG ATGAAGATTCCAATGGCGACATAGATAAACAAGAATTGAACCATTGTTTCCEST: gi|88373009|gb|CI640460.1|CI640460
genomic: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCGgtgagattcg ... tgctcctcagATGAAGATTCCAATGGCGAAATAGATAAACAAGAATTGAAGCATTGTTTCC
EST: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCG ATGAAGATTCCAATGGCGAAATAEST: gi|88302426|gb|CI668272.1|CI668272
genomic: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCGgtgagattcg ... tgctcctcagATGAAGATTCCAATGGCGAAATA
EST: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCG ATGAAGATTCCAATGGCGAAATAGATAAACAAGAATEST: gi|88368777|gb|CI649985.1|CI649985
genomic: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCGgtgagattcg ... tgctcctcagATGAAGATTCCAATGGCGAAATAGATAAACAAGAAT
EST: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCG ATGAAGATTCCAATGGCGAAATAGAEST: gi|88973647|gb|CI718075.1|CI718075
genomic: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCGgtgagattcg ... tgctcctcagATGAAGATTCCAATGGCGAAATAGA
EST: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCG ATGAAGATTCCAATGGCGAEST: gi|88441153|gb|CI602175.1|CI602175
genomic: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCGgtgagattcg ... tgctcctcagATGAAGATTCCAATGGCGA
EST: GAAAATCGATGAGAGCTTGAGGAAATGCCAGATCATCTTCGAGCAATTCG ATGAAGATTGCAATGGCGAAATAGATAAACAAGAATTEST: gi|88973656|gb|CI718084.1|CI718084
genomic: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCGgtgagattcg ... tgctcctcagATGAAGATTCCAATGGCGAAATAGATAAACAAGAATT
EST: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCG ATGAAGATTCCAATGGNGAAATEST: gi|88580296|gb|CI697213.1|CI697213
genomic: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCGgtgagattcg ... tgctcctcagATGAAGATTCCAATGGCGAAAT
EST: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCG ATGAAGATTCCAATGGCGAAATAGATEST: gi|58671024|gb|CK059710.1|CK059710
genomic: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCGgtgagattcg ... tgctcctcagATGAAGATTCCAATGGCGAAATAGAT
EST: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCG ATGAAGATTCCAATGGCGAAATAGATAAACAAGAATTGAAGCATTGTTTCC
genomic: GAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCGgtgagattcg ... tgctcctcagATGAAGATTCCAATGGCGAAATAGATAAACAAGAATTGAAGCATTGTTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCACGGGACTTCACTCAAGTCGTTCGATAGCATCATCATGAAGTTTCCGAAAATCGATGAGAGCTTGAGGAAATGCAAGATCATCTTCGAGCAATTCGgtgagattcgtcatgctgtctgcatgccaatcattgtctaattacctgattatctcctacttttggatctcactgctagtgagattcagtagagatcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA