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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGTCGCCGGCGGCGGCGGCGGCGACAACGCGGCGGAGCTCGTGCTCGACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAGgtcagctacatattcctgcataggaaaaaaacagagcatcatgcaaaaacagagcaaaacagagtgtcaactatggttaaaaatattatcccctcagaag...

Basic information

species Oryza sativa
transcript LOC_Os06g36560.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g36560.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G126900_T01 (Zea mays), 5'ss of exon 1
GGAAGGTCGCCGGCGGCGGCGGCGGCGACAACGCGGCGGAGCTCGTGCTCGACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAGgt----cagctacatattcctgcataggaaaaaaacagagcatcatgcaaaaacagagcaaaacagagtgtcaactatggttaaaaatattatcccctcagaag
 |  ||        | |  |||||| |   || | |||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||  |||||||||    ||||    |  |     |  |          | |   | | |    ||     ||  || ||      |    |   | || |||    | |      
TGGCGGAGAGGAAAGTCCCCGGCGGAGGTGACCCCGCGGAGCTGGTGCTCGACGCCGGCTTCGTCGTGCCGGACGCCAACGCCTTCGGCAATACCTTCAGgtgaaacagcctactgatttgctacggtgggttcttggggatccgtacgtcgacgccaaaactcaaaggccaggcgcaagcagagaagattggggcttat----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86877114|gb|CI311430.1|CI311430
EST:     GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAG                         GAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
genomic: GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAGgtcagctaca ... aaatctccagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
EST: gi|38475187|gb|CF959320.1|CF959320
EST:     GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAG                         GAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
genomic: GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAGgtcagctaca ... aaatctccagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
EST: gi|86851034|gb|CI311252.1|CI311252
EST:     GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAG                         GAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
genomic: GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAGgtcagctaca ... aaatctccagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
EST: gi|88353796|gb|CI634587.1|CI634587
EST:     GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAG                         GAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
genomic: GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAGgtcagctaca ... aaatctccagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
EST: gi|58670144|gb|CK058830.1|CK058830
EST:     GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAG                         GAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
genomic: GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAGgtcagctaca ... aaatctccagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
EST: gi|87009635|gb|CI309156.1|CI309156
EST:     GCAACGCCTTCAG                         GAATTATGAGGCCGAGACTGAGAGGGAGGAGACGGTGGAGGAGTTCTACCG
genomic: GCAACGCCTTCAGgtcagctaca ... aaatctccagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG