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GTCAAGTTCAGTGTGGAGGTGCCTCCTTCCATATGCCAGCAATGCTATGAAACTACTCTACAAGAGTACGCAAAGCGCTTCAAGgtaccatttctgtggtagcacatagaccaaatgaaacatatgcgtacatcatgggaacaatgttgattgattgcataatttgaaaagactgggcggctcg...
species | Oryza sativa |
transcript | LOC_Os06g20320.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCAGCAATGCTATGAAACTACTCTACAAGAGTACGCAGAAGCGCTTCAAG ATTCCTGGATTTCGTCCCGGGAAAGTAGTTCCAGAGAACGTACTTATAAACEST: gi|428387|gb|D24535.1|D24535
genomic: CCAGCAATGCTATGAAACTACTCTACAAGAGTACGCA-AAGCGCTTCAAGgtaccatttc ... ttcttgtcagATTCCTGGATTTCGTCCCGGGAAAGTAGTTCCAGAGAACGTACTTATAAAC
EST: GCCAGCAATGCTATGAAACTACTCTACAAGAGTACGCAAAGCGCTTCAAG ATTCCTGGATTTCGTCCCGGGAAAGTAGTTCCAGAGAACGTACTTATAAACEST: gi|14191998|gb|AU184209.1|AU184209
genomic: GCCAGCAATGCTATGAAACTACTCTACAAGAGTACGCAAAGCGCTTCAAGgtaccatttc ... ttcttgtcagATTCCTGGATTTCGTCCCGGGAAAGTAGTTCCAGAGAACGTACTTATAAAC
EST: GCCAGCAATGCTATGAAACTACTCTACAAGAGTACGCAAAGCGCTTCAAG ATTCCTGGATTTCGTCCCGGGAAAGTAGTTCCAGAGAACGTACTTATAAACEST: gi|27577340|gb|CB000035.1|CB000035
genomic: GCCAGCAATGCTATGAAACTACTCTACAAGAGTACGCAAAGCGCTTCAAGgtaccatttc ... ttcttgtcagATTCCTGGATTTCGTCCCGGGAAAGTAGTTCCAGAGAACGTACTTATAAAC
EST: GCCAGCAATGCTATGAAACTACTCTACAAGAGTACGCAAAGCGCTTCAAG ATTCCTGGATTTCGTCCCGGGAAAGTAGTTCCAGAGAACGTACTTATAAAC
genomic: GCCAGCAATGCTATGAAACTACTCTACAAGAGTACGCAAAGCGCTTCAAGgtaccatttc ... ttcttgtcagATTCCTGGATTTCGTCCCGGGAAAGTAGTTCCAGAGAACGTACTTATAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAGTTCAGTGTGGAGGTGCCTCCTTCCATATGCCAGCAATGCTATGAAACTACTCTACAAGAGTACGCAAAGCGCTTCAAGgtaccatttctgtggtagcacatagaccaaatgaaacatatgcgtacatcatgggaacaatgttgattgattgcataatttgaaaagactgggcggctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcggct