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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGATGCTCATACACCAAGGGAAAATTCTCAAGGATGATACAACTTTGGAAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatgatcttgtttaatggcatttgattgtttagcagtaactacccttctaaattattatttacagctagacaataagggtatttgcagaccaga...

Basic information

species Oryza sativa
transcript LOC_Os06g15360.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g15360.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G035417_T01 (Zea mays), 5'ss of exon 2
GCAGATGCTCATACACCAAGGGAAAATTCTCAAGGATGATACAACTTTGGAAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatgatct-tgtttaatggcatttgattgtttagcagtaactacccttctaaattattatttacagctagacaa--taagggtatttgcagaccaga
||| ||||||||| ||||||||||||||||||||||||| || ||||||||| |||||  ||||||||||||||||||||||||||||||| |||| ||||||| || || ||| ||| | ||  |||  |     |   || ||| |    |||| || |   |  |     | |      |    ||  |  || |     
GCAAATGCTCATATACCAAGGGAAAATTCTCAAGGATGAAACCACTTTGGAAAGCAACGGAGTTGCTGAGAACAGCTTCCTTGTTATAATGTTGTCCAAGgtatttggtgctctctgtcttatcccatcagtgatgtgttcaataa-tctggttcttaactggaaactgtgattggtttgcctgcaagtcgtgccatattt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29629490|gb|CB634499.1|CB634499
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|58682592|gb|CK071279.1|CK071279
EST:     GCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: GCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|58665658|gb|CK054344.1|CK054344
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88305062|gb|CI651993.1|CI651993
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|428582|gb|D24734.1|D24734
EST:     AGGCAACAAAGTTGCTTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGT
genomic: AGGCAACAAAGTTGCT-GAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGT
EST: gi|88735625|gb|CI759133.1|CI759133
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|33687245|gb|CF315484.1|CF315484
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|2428184|gb|C72647.1|C72647
EST:     AGGCAACAAAGTTNCTGAAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AGGCAACAAAGTTGCTGA-GAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|29643232|gb|CB648239.1|CB648239
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|33654535|gb|CF277149.1|CF277149
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|58598650|gb|CK009178.1|CK009178
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|29655833|gb|CB652108.1|CB652108
EST:     AGAACAGCTTCCTT-TTAAAATGCTGTCTAAG                         GGCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|33689698|gb|CF317937.1|CF317937
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88364556|gb|CI612371.1|CI612371
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|33656015|gb|CF278629.1|CF278629
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88371129|gb|CI597606.1|CI597606
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88351910|gb|CI625910.1|CI625910
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|58670896|gb|CK059582.1|CK059582
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88669853|gb|CI723969.1|CI723969
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGA
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGA
EST: gi|88726457|gb|CI750112.1|CI750112
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GGCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|86850325|gb|CI305564.1|CI305564
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCA
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCA
EST: gi|29631166|gb|CB636175.1|CB636175
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|29669284|gb|CB665559.1|CB665559
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|29636049|gb|CB641058.1|CB641058
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|29673854|gb|CB670129.1|CB670129
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|218502296|gb|FG962509.1|FG962509
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88456164|gb|CI567804.1|CI567804
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88356431|gb|CI652868.1|CI652868
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88396328|gb|CI598440.1|CI598440
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCT
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCT
EST: gi|58586179|gb|CF984487.1|CF984487
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88331149|gb|CI639560.1|CI639560
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTNTAAA-TGCTTCAAAGGCACCTGTGAG
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCT-TCAACTGCTTCAAAGGCACCTGTGAG
EST: gi|88430972|gb|CI571962.1|CI571962
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88402664|gb|CI598891.1|CI598891
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATC
EST: gi|88316471|gb|CI621710.1|CI621710
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|86851128|gb|CI311346.1|CI311346
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88694831|gb|CI738869.1|CI738869
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAG
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAG
EST: gi|88348123|gb|CI637584.1|CI637584
EST:     AAGGCAACAAAGTTGCTGAGAACAGNTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCANCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|86904514|gb|CI308724.1|CI308724
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88299070|gb|CI570040.1|CI570040
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|29657664|gb|CB653939.1|CB653939
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|117226238|gb|CT846174.1|CT846174
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88339739|gb|CI647603.1|CI647603
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|58611993|gb|CK039705.1|CK039705
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|568797|gb|D39646.1|D39646
EST:     AGGCAACAAAGTTGCTGAAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTTCCAAAGGCACCTGT
genomic: AGGCAACAAAGTTGCTGA-GAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTT-C-AAAGGCACCTGT
EST: gi|88720261|gb|CI743560.1|CI743560
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTG
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTG
EST: gi|88745523|gb|CI768883.1|CI768883
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAG
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAG
EST: gi|29670071|gb|CB666346.1|CB666346
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|29668712|gb|CB664987.1|CB664987
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCGCCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88288630|gb|CI663419.1|CI663419
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|29658464|gb|CB654739.1|CB654739
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88426796|gb|CI584159.1|CI584159
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTC-TTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCAC-TGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|29632660|gb|CB637669.1|CB637669
EST:     AAGGCAACAAAGTTGCTGACAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|29643186|gb|CB648193.1|CB648193
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAGG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCTGAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|29660320|gb|CB656595.1|CB656595
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|87016990|gb|CI286126.1|CI286126
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88401057|gb|CI685040.1|CI685040
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88336977|gb|CI627057.1|CI627057
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88827334|gb|CI777899.1|CI777899
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCAC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCAC
EST: gi|58596519|gb|CK007047.1|CK007047
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCC-TGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88299699|gb|CI577201.1|CI577201
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTT-AACTGGTT-AAAGGAACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|29631164|gb|CB636173.1|CB636173
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|86902307|gb|CI302338.1|CI302338
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACC
EST: gi|58667186|gb|CK055872.1|CK055872
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC
EST: gi|88387585|gb|CI585288.1|CI585288
EST:     AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAG                         GCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCAACTGTGAGC
genomic: AAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatg ... aaaatttcagGCCAAAGCATCATCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGATGCTCATACACCAAGGGAAAATTCTCAAGGATGATACAACTTTGGAAGGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGgtatgtgatgatcttgtttaatggcatttgattgtttagcagtaactacccttctaaattattatttacagctagacaataagggtatttgcagaccaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG