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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTCGCCGGAGCCGGCGTCCACCAGGCCGCTCAAGGTCGGCGTCGTGCTCTCCGGCGGTCAGGCGCCCGGCGGCCACAATGTCATCTGCGGCATCTTCGgtgagtgcgctagtgttctcgagctgtttgttaaccctgtttacccaaggctatggaggatcagttctctgtacaagcgaatttgaagctcgtggtttcg...

Basic information

species Oryza sativa
transcript LOC_Os06g13810.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G059151_T01 (Zea mays), 5'ss of exon 2
CCGTCGCCGGAGCCGGCGTCCACCAGGCCGCTCAAGGTCGGCGTCGTGCTCTCCGGCGGTCAGGCGCCCGGCGGCCACAATGTCATCTGCGGCATCTTCGgtgagtgcgc-tagtgttctcgagctgtttgttaaccctgtttacccaaggctatggaggatcagttctctgtacaagcgaatttgaagctcgtggt--ttcg
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CCGTCGGCCGAGCCCGCGGCGACCAGGCCGCTCAAGATCGGCGTTGTGCTCTCCGGTGGACAGGCGCCGGGCGGCCACAATGTCATCTGCGGCATCTTTGgtgagtatgcgttggcttcctgtgcttttcaatcaccaaaactgccaaggccta--gttgttatggtgctaatggaggcga-tttgaggttggtggagatcca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58611734|gb|CK039446.1|CK039446
EST:     CTCCGGCGGTCAGGCGCCCGGCGGCCACAATGTCATCTGCGGCATCTTCG                         ATTACCTGCAGGAATATGCAAAAGGA
genomic: CTCCGGCGGTCAGGCGCCCGGCGGCCACAATGTCATCTGCGGCATCTTCGgtgagtgcgc ... gtcggaccagATTACCTGCAGGAATATGCAAAAGGA
EST: gi|58598594|gb|CK009122.1|CK009122
EST:     CTCCGGCGGTCAGGCGCCCGGCGGCCACAATGTCATCTGCGGCATCTTCG                         ATTACCTGCAGGAATATGCAAAAGGATCCGTCATGTATGGATTCAAGGGAG
genomic: CTCCGGCGGTCAGGCGCCCGGCGGCCACAATGTCATCTGCGGCATCTTCGgtgagtgcgc ... gtcggaccagATTACCTGCAGGAATATGCAAAAGGATCCGTCATGTATGGATTCAAGGGAG
EST: gi|218497540|gb|FG953486.1|FG953486
EST:     TCATCTGCGGCATCTTCG                         ATTACCTGCAGGAATATGCGAAAGGATCCGTCATGTATGGATTCAAGGGAG
genomic: TCATCTGCGGCATCTTCGgtgagtgcgc ... gtcggaccagATTACCTGCAGGAATATGCAAAAGGATCCGTCATGTATGGATTCAAGGGAG