1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGGGATGGGGACGGCGGAATGGAGGGCATCGAAAAGCCCCGCATACTACAAACGCGGCGACTATGTGCCAGGATTGAAGgtaactaaatacttctccgtctcatttaagcgcagttgtgaattttcgtacccaatatttaacgtctgttttatttgaattttttttatgagtagtagtt...
species | Oryza sativa |
transcript | LOC_Os06g13720.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGAAAAGCCCCGCATACTACAAACGCGGCGACTATGTGCCAGGATTGAAG GTCGATGGTATGGATGTTCTTGCAGTCAAACAAGCTTGTAAATTTGCCAAGEST: gi|218498886|gb|FG966541.1|FG966541
genomic: CGAAAAGCCCCGCATACTACAAACGCGGCGACTATGTGCCAGGATTGAAGgtaactaaat ... tttggtgcagGTCGATGGTATGGATGTTCTTGCAGTCAAACAAGCTTGTAAATTTGCCAAG
EST: CGAAAAGCCCCGCATACTACAAACGCGGCGACTATGTGCCAGGATTGAAG GTCGATGGTATGGATGTTCTTGCAGTCAAACAAGCTTGTAAATTTGCCAAGEST: gi|218494727|gb|FG965194.1|FG965194
genomic: CGAAAAGCCCCGCATACTACAAACGCGGCGACTATGTGCCAGGATTGAAGgtaactaaat ... tttggtgcagGTCGATGGTATGGATGTTCTTGCAGTCAAACAAGCTTGTAAATTTGCCAAG
EST: CGAAAAGCCCCGCATACTACAAACGCGGCGACTATGTGCCAGGATTGAAG GTCGATGGTATGGATGTTCTTGCAGTCAAACAAGCTTGTAAATTTGCCAAGEST: gi|218483908|gb|FG949227.1|FG949227
genomic: CGAAAAGCCCCGCATACTACAAACGCGGCGACTATGTGCCAGGATTGAAGgtaactaaat ... tttggtgcagGTCGATGGTATGGATGTTCTTGCAGTCAAACAAGCTTGTAAATTTGCCAAG
EST: CGAAAAGCCCCGCATACTACAAACGCGGCGACTATGTGCCAGGATTGAAG GTCGATGGTATGGATGTTCTTGCAGTCAAACAAGCTTGTAAATTTGCCAAGEST: gi|218486487|gb|FG956233.1|FG956233
genomic: CGAAAAGCCCCGCATACTACAAACGCGGCGACTATGTGCCAGGATTGAAGgtaactaaat ... tttggtgcagGTCGATGGTATGGATGTTCTTGCAGTCAAACAAGCTTGTAAATTTGCCAAG
EST: CGAAAAGCCCCGCAT-C-ACAAACGCGGCGACTATGTGCCAGGATTGAAG GTCGATGGTATGGATGTTCTTGCAGTCAAACAAGCTTGTAAATTTGCCAAGEST: gi|218483530|gb|FG955438.1|FG955438
genomic: CGAAAAGCCCCGCATACTACAAACGCGGCGACTATGTGCCAGGATTGAAGgtaactaaat ... tttggtgcagGTCGATGGTATGGATGTTCTTGCAGTCAAACAAGCTTGTAAATTTGCCAAG
EST: CGAAAAGCCCCGCATACTACAAACGCGGCGACTATGTGCCAGGATTGAAG GTCGATGGTATGGATGTTCTTGCAGTCAAACAAGCTTGTAAATTTGCCAAGEST: gi|218494530|gb|FG953442.1|FG953442
genomic: CGAAAAGCCCCGCATACTACAAACGCGGCGACTATGTGCCAGGATTGAAGgtaactaaat ... tttggtgcagGTCGATGGTATGGATGTTCTTGCAGTCAAACAAGCTTGTAAATTTGCCAAG
EST: CGAAAAGCCCCGCATACTACAAACGCGGCGACTATGTGCCAGGATTGAAG GTCGATGGTATGGATGTTCTTGCAGTCAAACAAGCTTGTAAATTTGCCAAG
genomic: CGAAAAGCCCCGCATACTACAAACGCGGCGACTATGTGCCAGGATTGAAGgtaactaaat ... tttggtgcagGTCGATGGTATGGATGTTCTTGCAGTCAAACAAGCTTGTAAATTTGCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGGATGGGGACGGCGGAATGGAGGGCATCGAAAAGCCCCGCATACTACAAACGCGGCGACTATGTGCCAGGATTGAAGgtaactaaatacttctccgtctcatttaagcgcagttgtgaattttcgtacccaatatttaacgtctgttttatttgaattttttttatgagtagtagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctcc