1 5' 3' | 2 5' 3' | 3 5' 3' |
CAGTCCGGAGAAAGGATCAGGAGTATCCCTAAATCTTGATTGGAAGATAGGGATTGCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGAGgtgtggctatggactaatcatatataatctagtcctgctgcactcgtgttaagcattgttttgtctctttttgctgtttttcttatctgaatttttgttgaccag
species | Oryza sativa |
transcript | LOC_Os06g10760.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGATTGCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAACTCAGGAAACTTGAAGCTGCGGTGGAATCCATTCATEST: gi|88202576|gb|CI200931.1|CI200931
genomic: GGATTGCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGAGgtgtggctat ... tgttgaccagGGTGTAGAACTAGAACTCAGGAAACTTGAAGCTGCGGTGGAATCCATTCAT
EST: GGATTGCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAACTCAGGAAACTTGAAGCTGCGGTGGAATCCATTCATEST: gi|86425425|gb|CI070522.1|CI070522
genomic: GGATTGCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGAGgtgtggctat ... tgttgaccagGGTGTAGAACTAGAACTCAGGAAACTTGAAGCTGCGGTGGAATCCATTCAT
EST: GGATTGCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAACTCAGGAAACTTGAAGCTGCGGTGGAATCCATTCATEST: gi|88479990|gb|CI417261.1|CI417261
genomic: GGATTGCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGAGgtgtggctat ... tgttgaccagGGTGTAGAACTAGAACTCAGGAAACTTGAAGCTGCGGTGGAATCCATTCAT
EST: GGAAAAAATTGAG GGTGTAGAACTAGAACTCAGGAAACTTGAAGCTGCGGTGGAATCCATTCATEST: gi|88294984|gb|CI522938.1|CI522938
genomic: GGAAAAAATTGAGgtgtggctat ... tgttgaccagGGTGTAGAACTAGAACTCAGGAAACTTGAAGCTGCGGTGGAATCCATTCAT
EST: GCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAACTCAGGGAAACTTGAAGCTGCGGTGGAATCCATTCAEST: gi|86546825|gb|CI187031.1|CI187031
genomic: GCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGAGgtgtggctat ... tgttgaccagGGTGTAGAACTAGAACTCA-GGAAACTTGAAGCTGCGGTGGAATCCATTCA
EST: GGATTGCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAACTCAGGAAACTTGAAGCTGCGGTGGAATCCATTCATEST: gi|87034620|gb|CI189244.1|CI189244
genomic: GGATTGCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGAGgtgtggctat ... tgttgaccagGGTGTAGAACTAGAACTCAGGAAACTTGAAGCTGCGGTGGAATCCATTCAT
EST: GGATTGCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAACTCAGGAAACTTGAAGCTGCGGTGGAATCCATTCATEST: gi|86432120|gb|CI085731.1|CI085731
genomic: GGATTGCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGAGgtgtggctat ... tgttgaccagGGTGTAGAACTAGAACTCAGGAAACTTGAAGCTGCGGTGGAATCCATTCAT
EST: GGATTGCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGGG GGTGTAGAACTAGAACTCAGGAAACTTGAAGCTGCGGTGGAATCCATTCAT
genomic: GGATTGCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGAGgtgtggctat ... tgttgaccagGGTGTAGAACTAGAACTCAGGAAACTTGAAGCTGCGGTGGAATCCATTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTCCGGAGAAAGGATCAGGAGTATCCCTAAATCTTGATTGGAAGATAGGGATTGCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATTGAGgtgtggctatggactaatcatatataatctagtcctgctgcactcgtgttaagcattgttttgtctctttttgctgtttttcttatctgaatttttgttgaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA