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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTCGGTGGAGAAGTACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTCGTCGACGACGGCAAGgtgattaattcaatatttcttttcccttcgtttgaacaagaataatctttcattatttcacattggtttctgctctagcttgtagctataattctctctt...

Basic information

species Oryza sativa
transcript LOC_Os06g06350.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g06350.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G812228_T02 (Zea mays), 5'ss of exon 2
CAATTCGGTGGAGAAGTACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTCGTCGACGACGGCAAGgtgattaattcaatatttcttttcccttcgtttgaacaagaataatctttcattatttcacattggtttctgctctagcttgtagctataattctctctt
|   || |||||||||||||| |||| || |||||| |||||||||||||||||||||| |         |  || |  |  | | | || |||     |          ||     || | |    |   |     |  | || |  ||  | ||   |   ||  
CGCGTCCGTGGAGAAGTACCCCGACAACCAGATGCTGGGTCGCCGGAGAGTCGTCGACGGCAAGgtaagaacaaaattgacttgtttgtttcctcttccttcttccacccaacaacccact-tgctgctgggagaattaatttacccggt--ccattgcttcttcgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88333948|gb|CI645362.1|CI645362
EST:     ACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTCGTCGACGACGGCAAG                         GCAGGTGAATATGTNTGGATGACTTACAAGGAGGTTTATGACGTTGTGATG
genomic: ACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTCGTCGACGACGGCAAGgtgattaatt ... tcatttgcagGCAGGTGAATATGTTTGGATGACTTACAAGGAGGTTTATGACGTTGTGATG
EST: gi|86903830|gb|CI302476.1|CI302476
EST:     ACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTCGTCGACGACGGCAAG                         GCAGGTGAATATGTTTGGATGACTTACAAGGAGGTTTATGACGTTGTGATG
genomic: ACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTCGTCGACGACGGCAAGgtgattaatt ... tcatttgcagGCAGGTGAATATGTTTGGATGACTTACAAGGAGGTTTATGACGTTGTGATG
EST: gi|88331869|gb|CI642094.1|CI642094
EST:     ACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTCGTCGACGACGGCAAG                         GCAGGTGAATATGTTTGGATGACTTACAAGGAGGTTTATGACGTTGTGATG
genomic: ACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTCGTCGACGACGGCAAGgtgattaatt ... tcatttgcagGCAGGTGAATATGTTTGGATGACTTACAAGGAGGTTTATGACGTTGTGATG
EST: gi|88342452|gb|CI645974.1|CI645974
EST:     ACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTCGTCGACGACGGCAAG                         GCAGGTGAATATGTTTGGATGACTTACAAGGAGGTTTATGACGTTGTGATG
genomic: ACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTCGTCGACGACGGCAAGgtgattaatt ... tcatttgcagGCAGGTGAATATGTTTGGATGACTTACAAGGAGGTTTATGACGTTGTGATG
EST: gi|88309327|gb|CI655335.1|CI655335
EST:     ACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTCGTCGACGACGGCAAG                         GCAGGTGAATATGTTTGGATGACTTACAAGGAGGTTTATGACGTTGTGATG
genomic: ACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTCGTCGACGACGGCAAGgtgattaatt ... tcatttgcagGCAGGTGAATATGTTTGGATGACTTACAAGGAGGTTTATGACGTTGTGATG
EST: gi|88325766|gb|CI648211.1|CI648211
EST:     ACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTCGTCGACGACGGCAAG                         GCAGGTGAATATGTTTGGATGACTTACAAGGAGGTTTATGACGTTGTGATG
genomic: ACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTCGTCGACGACGGCAAGgtgattaatt ... tcatttgcagGCAGGTGAATATGTTTGGATGACTTACAAGGAGGTTTATGACGTTGTGATG