1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGCTGAAGCACAAGAAGGGAACGACCACGCTCGCGTTCATCTTCGACAAGGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctcggccctcttcctctctcgcgcttcgattttaggggcgtcttagggtttggcagctgcgcttaatttgtgatgtggtcgtgtgattcgggc...
species | Oryza sativa |
transcript | LOC_Os06g06030.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|2428687|gb|C73150.1|C73150
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAG-ATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|58597702|gb|CK008230.1|CK008230
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|88301098|gb|CI594624.1|CI594624
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|58600214|gb|CK010742.1|CK010742
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|58595565|gb|CK006093.1|CK006093
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|86830088|gb|CI290291.1|CI290291
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|568280|gb|D39117.1|D39117
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAN-ATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAEST: gi|29669742|gb|CB666017.1|CB666017
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|87023733|gb|CI286484.1|CI286484
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|218491233|gb|FG953090.1|FG953090
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTCTTGACATCCCTCCGTACATGCTTGGAAEST: gi|58604003|gb|CK014531.1|CK014531
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|88377147|gb|CI597931.1|CI597931
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|58600793|gb|CK011321.1|CK011321
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|2443151|gb|C74922.1|C74922
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAG-ATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|88402829|gb|CI613277.1|CI613277
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGC-AGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATACGTACATGCTTGGAAEST: gi|58592922|gb|CF991230.1|CF991230
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|58604785|gb|CK015313.1|CK015313
genomic: GGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|88744778|gb|CI768138.1|CI768138
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|8858107|gb|AU095425.1|AU095425
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|88400394|gb|CI593469.1|CI593469
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|218499941|gb|FG967251.1|FG967251
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|88745098|gb|CI768458.1|CI768458
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|55411406|gb|CV723782.1|CV723782
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|86887603|gb|CI294237.1|CI294237
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|10931155|gb|AU161429.1|AU161429
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAAEST: gi|33801628|gb|CF326686.1|CF326686
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
EST: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATAT CTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
genomic: GGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctc ... ttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCTGAAGCACAAGAAGGGAACGACCACGCTCGCGTTCATCTTCGACAAGGGCGTCATCGTCGCCGCCGACTCCCGCGCCAGCATGGGCGGATACATATgtgagcgctcggccctcttcctctctcgcgcttcgattttaggggcgtcttagggtttggcagctgcgcttaatttgtgatgtggtcgtgtgattcgggc
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