1 5' 3' | 2 5' 3' | 3 5' 3' |
CCCGGTTGATTCAGTACAAGAAACTTCTAGAGGTCTTCTGGGCAAGTCATGATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAGgtgcttgagttttctaaacctaaccccttttgtgcaatagatctttttgttcacagtttaccatagtcagatttatatactaatgatgtgattatctttt...
species | Oryza sativa |
transcript | LOC_Os06g04650.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAG ATCCATCATCTTCACAAATGGATCCGTGGAAGCTAGATTGGCTGGTCTTAGEST: gi|3760326|gb|C97580.1|C97580
genomic: GATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAGgtgcttgagt ... gtggtcacagATCCATCATCTTCACAAATGGATCCGTGGAAGCTAGATTGGCTGGTCTTAG
EST: GATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAG ATCCATCATCTTCACAAATGGATCCGTGGAAGCTAGATTGGCTGGTCTTAGEST: gi|10930950|gb|AU161224.1|AU161224
genomic: GATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAGgtgcttgagt ... gtggtcacagATCCATCATCTTCACAAATGGATCCGTGGAAGCTAGATTGGCTGGTCTTAG
EST: GATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAG ATCCATCATCTTCACAAATGGATCCGTGGAAGCTAGATTGGCTGGTCTTAGEST: gi|89167247|gb|CI252778.1|CI252778
genomic: GATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAGgtgcttgagt ... gtggtcacagATCCATCATCTTCACAAATGGATCCGTGGAAGCTAGATTGGCTGGTCTTAG
EST: GATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAG ATCCATCATCTTCACAAATGGATCCGTGGAAGCTAGATTGGCTGGTCTTAGEST: gi|27577735|gb|CB000430.1|CB000430
genomic: GATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAGgtgcttgagt ... gtggtcacagATCCATCATCTTCACAAATGGATCCGTGGAAGCTAGATTGGCTGGTCTTAG
EST: GATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAG ATCCATCATCTTCACAAATGGATCCGTGGAAGCTAGATTGGCTGGTCTTAGEST: gi|38470045|gb|CF954176.1|CF954176
genomic: GATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAGgtgcttgagt ... gtggtcacagATCCATCATCTTCACAAATGGATCCGTGGAAGCTAGATTGGCTGGTCTTAG
EST: GATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAG ATCCATCATCTTCACAAATGGATCCGTGGAAGCTAGATTGGCTGGTCTTAGEST: gi|87024018|gb|CI252765.1|CI252765
genomic: GATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAGgtgcttgagt ... gtggtcacagATCCATCATCTTCACAAATGGATCCGTGGAAGCTAGATTGGCTGGTCTTAG
EST: GATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAG ATCCATCATCTTCACAAATGGATCCGTGGAAGCTAGATTGGCTGGTCTTAG
genomic: GATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAGgtgcttgagt ... gtggtcacagATCCATCATCTTCACAAATGGATCCGTGGAAGCTAGATTGGCTGGTCTTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCGGTTGATTCAGTACAAGAAACTTCTAGAGGTCTTCTGGGCAAGTCATGATCCACGAGAGGTCTTTGGGCAAGGACCAGATGTTGGCAACCAATACAGgtgcttgagttttctaaacctaaccccttttgtgcaatagatctttttgttcacagtttaccatagtcagatttatatactaatgatgtgattatctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG