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ACAGATACTGAAAAACCTTGGGAAATACTTATTGTTGAATGATAGCCCGGATTTCCGCTTCAGGCTTATATTGTCATTGGGCCTCTTAGTTGGGGCAAAGgtaatgctacacctgaaagtggtaacccatatgagcagagtattttgtggctaagataaacctgcagcctaattctgttgttaagatatttcttttgtta...
species | Oryza sativa |
transcript | LOC_Os06g03770.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATTTCCGCTTCAGGCTTATATTGTCATTGGGCCTCTTAGTTGGGGCAAAG GTTATAAATGTTCAAGTGCCTTTCTTGTTTAAGCTTGCTGTCGATTGGCTTEST: gi|29646655|gb|CB651662.1|CB651662
genomic: ATTTCCGCTTCAGGCTTATATTGTCATTGGGCCTCTTAGTTGGGGCAAAGgtaatgctac ... tgaacaccagGTTATAAATGTTCAAGTGCCTTTCTTGTTTAAGCTTGCTGTCGATTGGCTT
EST: ATTTCCGCTTCAGGCTTATATTGTCATTGGGCCTCTTAGTTGGGGCAAAG GTTATAAATGTTCAAGTGCCTTTCTTGTTTAAGCTTGCTGTCGATTGGCTTEST: gi|29670310|gb|CB666585.1|CB666585
genomic: ATTTCCGCTTCAGGCTTATATTGTCATTGGGCCTCTTAGTTGGGGCAAAGgtaatgctac ... tgaacaccagGTTATAAATGTTCAAGTGCCTTTCTTGTTTAAGCTTGCTGTCGATTGGCTT
EST: ATTTCCGCTTCAGGCTTATATTGTCATTGGGCCTCTTAGTTGGGGCAAAG GTTATAAATGTTCAAGTGCCTTTCTTGTTTAAGCTTGCTGTCGATTGGCTTEST: gi|5667164|gb|AU077424.1|AU077424
genomic: ATTTCCGCTTCAGGCTTATATTGTCATTGGGCCTCTTAGTTGGGGCAAAGgtaatgctac ... tgaacaccagGTTATAAATGTTCAAGTGCCTTTCTTGTTTAAGCTTGCTGTCGATTGGCTT
EST: ATTTCCGCTTCAGGCTTATATTGTCATTGGGCCTCTTAGTTGGGGCAAAG GTTATAAATGTTCAAGTGCCTTTCTTGTTTAAGCTTGCTGTCGATTGGCTT
genomic: ATTTCCGCTTCAGGCTTATATTGTCATTGGGCCTCTTAGTTGGGGCAAAGgtaatgctac ... tgaacaccagGTTATAAATGTTCAAGTGCCTTTCTTGTTTAAGCTTGCTGTCGATTGGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGATACTGAAAAACCTTGGGAAATACTTATTGTTGAATGATAGCCCGGATTTCCGCTTCAGGCTTATATTGTCATTGGGCCTCTTAGTTGGGGCAAAGgtaatgctacacctgaaagtggtaacccatatgagcagagtattttgtggctaagataaacctgcagcctaattctgttgttaagatatttcttttgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG