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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAAGTTGGATGCCGGCTGCTCTCAAGATGCCAGAGGATGAGTTGATCAATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGGgtctgttcctttccatcttttatgtttctgctcttctcaattgttccttgttgccatctcattttttgttccaagtcatacttgtggaaataatgccaat...

Basic information

species Oryza sativa
transcript LOC_Os05g51630.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51630.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G456000_T01 (Zea mays), 5'ss of exon 2
TTTTAAGTTGGATGCCGGCTGCTCTCAAGATGCCAGAGGATGAGTTGATCAATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGGgtctgttcctttccatcttttatgtttctgctcttctcaattgttccttgttgc-catctcattttttgttccaagtcatacttgtggaaataatgccaat---------------------------------------------
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TTTTAAACTGGATGCCAGCTGCTCTCAAGATGCCCCAGGATGAGCTCATTAACCATGCAGGCCTTGATTCTGTGGTCTACCTACGGATATACGTAACAGGgtatgttatgtc---ttttctatgttttggttatact--gttatctcctgctgttcatctcattcaatcttttaa-tattttccatcgctgttttcccagtcttccgatgtctatgcactaattgaattcttattaattgctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29660843|gb|CB657118.1|CB657118
EST:     AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGG                         GATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
genomic: AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGGgtctgttcct ... ccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
EST: gi|33675058|gb|CF303297.1|CF303297
EST:     AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGG                         GATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
genomic: AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGGgtctgttcct ... ccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
EST: gi|29683379|gb|CB679654.1|CB679654
EST:     AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGG                         GATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
genomic: AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGGgtctgttcct ... ccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
EST: gi|29666785|gb|CB663060.1|CB663060
EST:     AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGG                         GATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
genomic: AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGGgtctgttcct ... ccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC