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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatctcttctcttctccccgatctcgatctcccttgccccccagctctcacgcgattcctattattcctgccgctgctgcag

Basic information

species Oryza sativa
transcript LOC_Os05g51530.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G144372_T01 (Zea mays), 5'ss of exon 2
TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatctcttctcttctccccg----atctcgatctcccttgccccccagctctcacgcgattcctattattcctgccgctgctgcag-----------------------
||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||  |||    |  || | || ||||    |||||||||||| ||  ||| |  ||  |    | | ||       |  ||| ||| | |                         
TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTTCTCGCCCTCAGCGACGACCTCGTCAAGgttccccccgccgcctttgcttcccgcacgatctcgatctccgttttcccacctctaacgtctgctgccccgagcactagcctctgattcgatgccatctataccctgcccgcag

upper sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 2
TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaaccc-----atctct-tctcttctccccgatctcgatctcccttgccccccagctctcacgcgattcc-tattattcctgccgctgc-tgcag--------
||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||||||  |||     |||||  || | |||||||  ||  | |  |||  | | |    |||| |  |  | || |  | |   || | ||   || |         
TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgcacgatctcgatcccctctcccctctccagctgccccggggcactagcctctgattccgtgccatcgtgtgtttgtctctatatgtatacccgcag

upper sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G128995_T03 (Zea mays), 5'ss of exon 1
-------------------------------TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaaccc-----atctct-tctcttctccccgatctcgatctcccttgccccccagctctcacgcgattcc-tattattcctgccgctgc-tgcag--------
                               ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||||||  |||     |||||  || | |||||||  ||  | |  |||  | | |    |||| |  |  | || |  | |   || | ||   || |         
TTAATCTCGCGTAGCCTCACCGTCCGCGCAGTTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgcacgatctcgatcccctctcccctctccagctgccccggggcactagcctctgattccgtgccatcgtgtgtttgtctctatatgtatacccgcag

upper sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G177912_T02 (Zea mays), 5'ss of exon 2
TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgta------acccatctcttctcttc---tccccgatctc-------gatctcccttgccccccagctctcacgcgattcctatt---attcctgccgctgctgcag---------------------------
||||||||||| || |||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||        |   |    | ||||   || ||  ||||       | || |    |||||| |||  |      ||      |   ||||| | |    ||||                             
TTCAACGTCCCGGACCTCCGCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgggctgcccggccccttcggttctccagtctcttccggagttcgctgccgcccccgagcattagtctaatcttgggttcgattccgggccactctgcctcacttcgtcctccctctcctccgccag

upper sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA16G26220.1 (Glycine max), 5'ss of exon 2
TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatctcttctcttctccccga------tctcgatctcccttgc---cccccagctctcacgcgattcctattattcctgccgctgctgcag--------------------------------------------------------------------
|||||  ||||| ||||||| ||||| || || |||||||||||| |||||||||||||||||||||||||| |  |    | |   || | |  |      || |  | | | ||||   ||   |  |        ||| |   ||    ||    || ||  |                                                                    
TTCAATATCCCCAATCTCCGGGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATCTCGTCAAGgta-cgtacaattcccaatcacacgaaaaacattcaccgttttcgttgcgatccttgatattgtggaaaattgcggataaatgtggttatgttgtggctgcaattgcgccttgtttgtttattggtttcattttgcttgatctgtttgtgtgtgtgtgtgtgcag

upper sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA02G07260.1 (Glycine max), 5'ss of exon 2
TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatctcttctcttctccccgatc--tcgatctcccttgccccc-cagctctcacgcgattcctattattcctgccgctgctgcag-------------------------------------------------------------
|||||| ||||| ||||||||||||| || || |||||||||||| ||||||||||||||  ||||||||||   ||  |   |  |    ||  | |  |||       || |     | | ||    ||||| | |  ||||   |       | |||                                                             
TTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAGgtacgtcaaattcccaatcacaccaaaacattcgcgactatttacggttgcggttccgttgcgatccttgatattgtgg--aaaattacagataaatgtggctgcaatttcattatgcttgatctgttttctgtgtgtgtgtgttcgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88365018|gb|CI616437.1|CI616437
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATAGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88364121|gb|CI610465.1|CI610465
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTCCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88294694|gb|CI602414.1|CI602414
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88343326|gb|CI627286.1|CI627286
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88827859|gb|CI778424.1|CI778424
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88299480|gb|CI574593.1|CI574593
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88407461|gb|CI586302.1|CI586302
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88430052|gb|CI565065.1|CI565065
EST:     GCGTAGGCACGCTCGACTCCCTCCTCGGCCTCAGCGACGATCTCGTCAAG                         TC-AACGTCTTCATCG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCG
EST: gi|66912614|gb|CX099462.1|CX099462
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|2427977|gb|C72440.1|C72440
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|58664797|gb|CK053483.1|CK053483
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88423778|gb|CI617130.1|CI617130
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88401806|gb|CI591133.1|CI591133
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGGTCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|29656670|gb|CB652945.1|CB652945
EST:     GCGTCGCCTCGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACCAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|29662007|gb|CB658282.1|CB658282
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88761682|gb|CI771238.1|CI771238
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88415574|gb|CI589166.1|CI589166
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|58599761|gb|CK010289.1|CK010289
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88398674|gb|CI598639.1|CI598639
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCAAAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|58595941|gb|CK006469.1|CK006469
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88416976|gb|CI573691.1|CI573691
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|29612869|gb|CB617882.1|CB617882
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88443572|gb|CI597039.1|CI597039
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88432524|gb|CI567563.1|CI567563
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|58667113|gb|CK055799.1|CK055799
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88397236|gb|CI580746.1|CI580746
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88434036|gb|CI586914.1|CI586914
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|58654107|gb|CK042787.1|CK042787
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88402054|gb|CI593766.1|CI593766
EST:     GCGTCGGCA-GCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88389857|gb|CI626626.1|CI626626
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88399964|gb|CI588268.1|CI588268
EST:     G-GTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88426951|gb|CI601912.1|CI601912
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88317321|gb|CI627970.1|CI627970
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|218498003|gb|FG943208.1|FG943208
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCGCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|58656444|gb|CK045124.1|CK045124
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88415136|gb|CI583959.1|CI583959
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|33653619|gb|CF276233.1|CF276233
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88389232|gb|CI598030.1|CI598030
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|58686384|gb|CK075071.1|CK075071
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|56157721|gb|C25980.2|C25980
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|58600826|gb|CK011354.1|CK011354
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88433541|gb|CI594355.1|CI594355
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|29613101|gb|CB618114.1|CB618114
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|58606956|gb|CK034989.1|CK034989
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|58681691|gb|CK070378.1|CK070378
EST:     GCGTCGGCACGCTCGACTNCAGGGTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|58660134|gb|CK048814.1|CK048814
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|58678473|gb|CK067160.1|CK067160
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88717279|gb|CI740789.1|CI740789
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88740192|gb|CI763700.1|CI763700
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|86906056|gb|CI292587.1|CI292587
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|428004|gb|D24151.1|D24151
EST:     GCGTCGGCACGCTNGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTTGGACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|58596246|gb|CK006774.1|CK006774
EST:     GGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88403992|gb|CI601402.1|CI601402
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88738972|gb|CI762480.1|CI762480
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|58688997|gb|CK077684.1|CK077684
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88433997|gb|CI586875.1|CI586875
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88392446|gb|CI612920.1|CI612920
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88402768|gb|CI613216.1|CI613216
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGAAGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCCACAAGATCCGGAGGCAGATCGA
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGC-ACAAGATCCGGAGGCAGATCGA
EST: gi|88426906|gb|CI584269.1|CI584269
EST:     CGTCGGCACGCTCGACTACCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCAAAAGATCCGGAGGCAGATCGAG
genomic: CGTCGGCACGCTCGACT-CCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88360528|gb|CI608380.1|CI608380
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|33664188|gb|CF295155.1|CF295155
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|27578007|gb|CB000702.1|CB000702
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|58660817|gb|CK049497.1|CK049497
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88745715|gb|CI769075.1|CI769075
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88372240|gb|CI619570.1|CI619570
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|29613962|gb|CB618975.1|CB618975
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
EST: gi|88406511|gb|CI599004.1|CI599004
EST:     GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAG                         TCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 71 (downstream exon)
Score: 55

TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatc ... gctgctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAGGAGCTAGAGCGCGCCGGGGGTGTCGAGAGTGGGGCTCTCACCGTTGACG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatctcttctcttctccccgatctcgatctcccttgccccccagctctcacgcgattcctattattcctgccgctgctgcag

- - - - - - - - - - - - - - - - - - -  CTCCTC