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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGCGCGGCGTTCGTTCACCTGAAGCAAGCGGATTTGTCCAAGCACATCCGCAACCTCTGCGCCGCAAGCCGCGCGATACTGCTCTCTGGCCCAACAGgttcgtggatgttcgctgcttgcactgcacttcagactggatcacattgatctccgtttcttctcgtggacactgtcaccttgctagctgctgttgactgaatctgtccgcaatgtgcgtgcag

Basic information

species Oryza sativa
transcript LOC_Os05g50750.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g50750.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G013115_T02 (Zea mays), 5'ss of exon 2
ATCAGCGCGGCGTTCGTTCACCTGAAGCAAGCGGATTTGTCCAAGCACATCCGCAACCTCTGCGCCGCAAGCCGCGCGATACTGCTCTCTGGCCCAACAGgttcgtggatgttcgctgcttg-cactgcacttcagactgg--atcacatt-gatctccgtttct--------------tctcgtggacact---gtcaccttgcta-gctgctgttgactgaatctgtccgcaa-tgtgcgtgcag
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ATCAGCGCGGCTTTCGTCCACCTCAAGAACGCGGAGCTGCTGAAGCACGTCCGGAACCTCTCCGCCGCCAGCCACGCCATCCTGCTCTCCGGCCCCACAGgttcgtttccgtcgtccgccggtccctggccgcaagaacaacaaccacccccgctcgctgcttgcgtgtgggcagagggtactgtggccacttgtatccccctgtttcgctgatgcatgatgaccttgttggctgctgtctctgcag