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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGGGCAGCGGCGAGAAGCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATATgtgagtttccctctcgccctgcctcgatttctctgaagatttttgctacggttgtcactttgtcaggttgcttctagccaagctgcagtgtaacagagagagttgcattgctgttttgttgtttttgcag

Basic information

species Oryza sativa
transcript LOC_Os05g48160.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g48160.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G481261_T01 (Zea mays), 5'ss of exon 3
CGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGGGCAGCGGCGAGAAGCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATATgtgagtttccctctcgccctgcctcgatttct--ctgaagatttttgctacggttgtcactttgtcaggttgcttctagccaagctgcagtgtaacagagagagttgcattgctgttttgttgtttttgcag
||| || || ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||  |||||||||||||||||||||||| ||||| ||||| |   || |    || | |   | |    ||| ||  |            ||    |||     | |||   ||                                                     
CGACGGCTCCTTCCCGGTGGACCGGGCGGAGGCGGCCAGCGGCGAGAAGCTCCTCCGTGACGTCATGAACGAGAACAAGATCGAGCTCTACGCCGCATACgtgagctctgcttttcttcttcatttgtgttgtgctgtagcctgacagacaaagcgtggtcttgctgtatcgctcgcag-----------------------------------------------------

upper sequence: LOC_Os05g48160.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G470653_T01 (Zea mays), 5'ss of exon 2
CGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGGGCAGCGGCGAGAAGCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATATgtgagtttccctctcgccctgcctcgatttctctgaagatttttgctacg-gttgtcactttgtcaggttgcttctagccaagctgcagtgtaacagagagagttgcattgctgttttgttgtttttgcag
||| || || |||||  |||||||||||| ||||  ||||||||||||||||||| | |||||||||  |||||||||||||||||||||||  ||||| ||| | |   || |    || | || |||| | |   | | |   || |  |      | | |||  | ||  ||   |  ||                                                
CGACGGCTCCTTCCCTTTGGACCGGGCGGAGGCGACCAGCGGCGAGAAGCTCCTCTGTGACGTCATGAACGAGAACAAGATCGAGCTCTACGTCGCATACgtgggctctgcttttcttcttcttc-atttgtgttgtgttgtagcctgcttgacaaagcatggtcttgatgtatcgctcgcag------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88485358|gb|CI422629.1|CI422629
EST:     TCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATAT                         GGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTC
genomic: TCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATATgtgagtttcc ... gtttttgcagGGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTC
EST: gi|86528962|gb|CI169168.1|CI169168
EST:     TCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATAT                         GGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTC
genomic: TCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATATgtgagtttcc ... gtttttgcagGGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTC