1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGACATGCCGCTCCTCAACGCCGACCTGCTACCACCACCACCCTCCGGCCGCCACCGCCATGGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGgtacacacaaatccaatgcatgcaactatccaactaatcacaatatttctgcctttctctcacactttcagtcatcagttgcgtctgcaccacacaagta...
species | Oryza sativa |
transcript | LOC_Os05g47670.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCACCGCCATGGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAG ATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGATEST: gi|29662570|gb|CB658845.1|CB658845
genomic: GCCACCGCCATGGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGgtacacacaa ... caaattgcagATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGAT
EST: CCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAG ATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGATEST: gi|87026428|gb|CI252382.1|CI252382
genomic: CCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGgtacacacaa ... caaattgcagATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGAT
EST: TACCGCCACCCCCACGTCGGCTCCCCCGAGGAAGAG ATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGATEST: gi|29659759|gb|CB656034.1|CB656034
genomic: TACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGgtacacacaa ... caaattgcagATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGAT
EST: CCACCGCCATGAGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAG ATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGAT
genomic: CCACCGCCATG-GATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGgtacacacaa ... caaattgcagATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACATGCCGCTCCTCAACGCCGACCTGCTACCACCACCACCCTCCGGCCGCCACCGCCATGGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGgtacacacaaatccaatgcatgcaactatccaactaatcacaatatttctgcctttctctcacactttcagtcatcagttgcgtctgcaccacacaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA