1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTTGGAGCTTTTGCTCGGGCGATTGATTTTGGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacgaattactaggaaatagagtatttctttgcatttaagaccaggatgaatcgatttattgggcttaaattagtgggttatcttgtgattacct...
species | Oryza sativa |
transcript | LOC_Os05g46720.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88404707|gb|CI583514.1|CI583514
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88386210|gb|CI572827.1|CI572827
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|29669409|gb|CB665684.1|CB665684
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88423499|gb|CI579211.1|CI579211
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|29624625|gb|CB629636.1|CB629636
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|29628534|gb|CB633545.1|CB633545
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCACGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|29631056|gb|CB636065.1|CB636065
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|29623352|gb|CB628363.1|CB628363
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|29635051|gb|CB640060.1|CB640060
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88417438|gb|CI579099.1|CI579099
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|33657793|gb|CF280407.1|CF280407
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|29628211|gb|CB633222.1|CB633222
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88386060|gb|CI570695.1|CI570695
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88432589|gb|CI567628.1|CI567628
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88344829|gb|CI624480.1|CI624480
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88404383|gb|CI578260.1|CI578260
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|29636608|gb|CB641617.1|CB641617
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88409627|gb|CI568917.1|CI568917
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88299560|gb|CI574673.1|CI574673
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88399898|gb|CI585817.1|CI585817
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88367624|gb|CI568396.1|CI568396
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|29630847|gb|CB635856.1|CB635856
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88401724|gb|CI591051.1|CI591051
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88424359|gb|CI582283.1|CI582283
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|58595020|gb|CF993328.1|CF993328
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GAGGTCGGAGGAGGGGATGTCAGGACCACTAGATCGATTTG-CAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|25798393|gb|CA754354.1|CA754354
genomic: GA-ATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|29636223|gb|CB641232.1|CB641232
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|29628429|gb|CB633440.1|CB633440
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|33675068|gb|CF303307.1|CF303307
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88331717|gb|CI640748.1|CI640748
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|29640888|gb|CB645895.1|CB645895
genomic: GGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACGEST: gi|88417178|gb|CI576252.1|CI576252
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
EST: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCAT GTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
genomic: GGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacga ... gctggtgcagGTTTTGAAGGTTTTACGCATAATGATGAAAAGAAAGAGATCAGATCTGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGAGCTTTTGCTCGGGCGATTGATTTTGGAATCGGAGGAGGGGATGTCAGGACCACTCGATCGATTTGCCAGGCCATgtgagtacgaattactaggaaatagagtatttctttgcatttaagaccaggatgaatcgatttattgggcttaaattagtgggttatcttgtgattacct
- - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - GAGGAG