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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGGCGGGGCGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATGGGCTTGATCGCGCGTACGGTTCTCGACGGCGGCCGCCGTGTCGTCGGgtacgtacgcacgcagccagcttcgtttctgcgcctgagagcgatttcctcattacttttgctgccttgctttcgcggctgcacctgcggatgcctgtgattctcgtgtacgtgctacaccaccatctaatgcggcgtgataaaatttttgcttgatttattcgcag

Basic information

species Oryza sativa
transcript LOC_Os05g46360.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g46360.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G021406_T01 (Zea mays), 5'ss of exon 2
GTGAGGCGGGGCGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATGGGCTTGATCGCGCGTACGGTTCTCGACGGCGGCCGCCGTGTCGTCGGgtacgtacgcacgcagccagcttcgtttctgcgcctgagagcgatttcctcattacttttgctgccttgctttcgcggctgcacctgcggatgcctgtgattctcgtgtacgtgctacaccaccatctaatgcggcgtgataaaatttttgcttgatttattcgcag
||| || ||||| || | || ||||| ||||||||||||||||| ||||||||| |||| || || |||||||   |||||||| ||| |||| ||||||||  | ||  ||  ||    | |    | | |||     |  |||| |       ||| ||||    ||||  |   | |  || |      ||| |||  | | |   ||      |  |   ||  |      |           || | | ||  ||| |||
GTGCGGAGGGGCATCAACCTCGTCTATGGCGGCGGCAGCATCGGTCTGATGGGCGTGATTGCTCGGACGGTTCGTCACGGCGGCTGCCATGTCCTCGGgtac-catgccggctaccgcgcttgcagttccacctct---ctttttcgtttcgttcttttctgcacccctttt-caaatac-tctccatccatctgagatgttggagctggtatgtttctgcttgcttttttttttttgcttctaacctgttcg-ttcgttcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58592728|gb|CF991036.1|CF991036
EST:     ATGGGCTTGATCGCGCGTACGGTTCTCGACGGCGGCCGCCGTGTCGTCGG                         GGTGATTCCTAGAGCTCTCATGGCTGTCGAG
genomic: ATGGGCTTGATCGCGCGTACGGTTCTCGACGGCGGCCGCCGTGTCGTCGGgtacgtacgc ... ttattcgcagGGTGATTCCTAGAGCTCTCATGGCTGTCGAG