1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAAgtaaggctttgatcttccactttttttcttcttctaatatctgagcttgtaatttgtgccatgtgtaatcctgaaacttttgttcttatcgttatcag
species | Oryza sativa |
transcript | LOC_Os05g44922.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAA GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAGEST: gi|88411074|gb|CI606293.1|CI606293
genomic: ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAAgtaaggcttt ... tcgttatcagGCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAG
EST: ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAA GCAATATTTTGTTAATGAAGEST: gi|58609232|gb|CK037265.1|CK037265
genomic: ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAAgtaaggcttt ... tcgttatcagGCAATATTTTGTTAATGAAG
EST: ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAA GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAGEST: gi|88360390|gb|CI612109.1|CI612109
genomic: ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAAgtaaggcttt ... tcgttatcagGCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAG
EST: ACTTATCCCAATCCACCTACAAGATCATCCAGCCTATTCAACTGTCAA GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAGEST: gi|58668738|gb|CK057424.1|CK057424
genomic: ACTTATCCCAATCCAC-TACAAGATCATCCAGCCTATTCAACTGTCAAgtaaggcttt ... tcgttatcagGCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAG
EST: ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAA GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAGEST: gi|88399416|gb|CI606037.1|CI606037
genomic: ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAAgtaaggcttt ... tcgttatcagGCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAG
EST: ACTTATCCCAATCCACTACAAGATCATCAAGCCTATTCAACTGTCAA GCAATATTTTGTTAEST: gi|58606730|gb|CK034763.1|CK034763
genomic: ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAAgtaaggcttt ... tcgttatcagGCAATATTTTGTTA
EST: ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAA GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAGEST: gi|58671614|gb|CK060300.1|CK060300
genomic: ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAAgtaaggcttt ... tcgttatcagGCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAG
EST: ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAA GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAGEST: gi|58671004|gb|CK059690.1|CK059690
genomic: ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAAgtaaggcttt ... tcgttatcagGCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAG
EST: ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAA GCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAG
genomic: ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAAgtaaggcttt ... tcgttatcagGCAATATTTTGTTAATGAAGATGACACTGTACCCCAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTATCCCAATCCACTACAAGATCATCCAGCCTATTCAACTGTCAAgtaaggctttgatcttccactttttttcttcttctaatatctgagcttgtaatttgtgccatgtgtaatcctgaaacttttgttcttatcgttatcag
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