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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGTGAAGGAGGGACTTGTTCTTGGTCAACTAATGGGAAATCGATTTACAATTACTCTGAGgtacttgttttttatttctccttttagtttaatgtaaaaaactaaaaatgttctctagtgctctaaaaaatgatttgcactaatcttagagctcatggag...

Basic information

species Oryza sativa
transcript LOC_Os05g43374.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g43374.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G096553_T02 (Zea mays), 5'ss of exon 7
TTATGTGAAGGAGGGACTTGTTCTTGGTCAACTAATGGGAAATCGATTTACAATTACTCTGAGgtacttgttttttatttctccttttagtttaatgtaaaaaactaaaaatgttctctagtgctctaaaaa-atgatttg-cactaatcttag-agctcatggag
||| |||||||||||||||||||||||||| || |  ||||||||||||||||||||||||||||| |   |||   | |       || ||||   |   | |||| |    ||  || || |   |     || | ||| | | || | ||| | ||  |    
TTACGTGAAGGAGGGACTTGTTCTTGGTCAGCTCACAGGAAATCGATTTACAATTACTCTGAGgtagtgtctttgcttataattcaatattttagcatgccagactacagtattttcctggtaccaaattctcatcacttgactccaaccatagtaacttctt---

upper sequence: LOC_Os05g43374.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G307981_T01 (Zea mays), 5'ss of exon 4
TTATGTGAAGGAGGGACTTGTTCTTGGTCAACTAATGGGAAATCGATTTACAATTACTCTGAGgtacttgttttttatttctccttttagtttaatgtaaaaaactaaaaatgttctctagtgctctaaaaa-atgatttg-cactaatcttag-agctcatggag
||| |||||||||||||||||||||||||| || |  ||||||||||||||||||||||||||||| |   |||   | |       || ||||   |   | |||| |    ||   | || |   |     || | ||| | | || | ||| | ||  |    
TTACGTGAAGGAGGGACTTGTTCTTGGTCAGCTCACAGGAAATCGATTTACAATTACTCTGAGgtagtgtctttgcttataattcaatattttagcatgccagactacagtattttcatggtaccaaattctcatcacttgactccaaccatagtaacttctt---