1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCAACAAGTGAGATGCTACCAAGGAATGAAGTGCTCGGTGGATATATCTTTGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatccaacttaccttatcttctgaatcatcacttggcatattgttccgagaataaattcatgctgctatttacgatgatcaatatcaaataaccttctgatatataatcatatattgctgttctgcag
species | Oryza sativa |
transcript | LOC_Os05g41930.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|29669162|gb|CB665437.1|CB665437
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|29676071|gb|CB672346.1|CB672346
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|218501446|gb|FG958594.1|FG958594
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|58668957|gb|CK057643.1|CK057643
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|58694052|gb|CK082739.1|CK082739
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|38470564|gb|CF954695.1|CF954695
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|58679301|gb|CK067988.1|CK067988
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAAEST: gi|29676451|gb|CB672726.1|CB672726
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: CAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|33793317|gb|CF322539.1|CF322539
genomic: CAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGGATTCAGTCCGAGCAATTATTCCTGGTCTAEST: gi|58679924|gb|CK068611.1|CK068611
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTG-ATTCAGTCCGAGCAATTATTCCTGGTCTA
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|109974438|gb|DT806909.1|DT806909
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|29646527|gb|CB651534.1|CB651534
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|163928377|gb|EG712621.1|EG712621
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|29669163|gb|CB665438.1|CB665438
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|29667743|gb|CB664018.1|CB664018
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: AGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGT-CGNAGCAATTATTCCTGGTCTAEST: gi|29676329|gb|CB672604.1|CB672604
genomic: AGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCG-AGCAATTATTCCTGGTCTA
EST: AAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|29675861|gb|CB672136.1|CB672136
genomic: AAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|218502990|gb|FG954156.1|FG954156
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|29642637|gb|CB647644.1|CB647644
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|218500689|gb|FG944959.1|FG944959
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|29617826|gb|CB622838.1|CB622838
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|29642202|gb|CB647209.1|CB647209
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|163928338|gb|EG714682.1|EG714682
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|218481318|gb|FG953310.1|FG953310
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|29657474|gb|CB653749.1|CB653749
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|84117273|gb|CD151040.1|CD151040
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|29618262|gb|CB623274.1|CB623274
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|58610657|gb|CK038369.1|CK038369
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTAEST: gi|218479007|gb|FG957145.1|FG957145
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTA
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|29675022|gb|CB671297.1|CB671297
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTACEST: gi|29673873|gb|CB670148.1|CB670148
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAACAAGTGAGATGCTACCAAGGAATGAAGTGCTCGGTGGATATATCTTTGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatccaacttaccttatcttctgaatcatcacttggcatattgttccgagaataaattcatgctgctatttacgatgatcaatatcaaataaccttctgatatataatcatatattgctgttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT