Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAACAAGTGAGATGCTACCAAGGAATGAAGTGCTCGGTGGATATATCTTTGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatccaacttaccttatcttctgaatcatcacttggcatattgttccgagaataaattcatgctgctatttacgatgatcaatatcaaataaccttctgatatataatcatatattgctgttctgcag

Basic information

species Oryza sativa
transcript LOC_Os05g41930.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g41930.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G033117_T01 (Zea mays), 5'ss of exon 2
CCAACAAGTGAGATGCTACCAAGGAATGAAGTGCTCGGTGGATATATCTTTGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatccaacttaccttatcttctgaatcatcact-tggcatattgttccgagaataaattcatgctgctatttacgatgatcaatatcaaataaccttctgatatataatcatatattgctgttctgcag
|| || |||||||||||||| ||||||||||| || |||||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||| ||||        |||       ||| || ||| |     ||| ||   | || ||| | ||     || ||  ||||  || | |  |||    |  || ||| | |  || ||||||| ||||||||
CCGACGAGTGAGATGCTACCGAGGAATGAAGTCCTTGGTGGATACATCTTTGTCTGCAACAACGATACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgttatcccgtcccttttagaaatcaaatgataactgttctggattttttttaaaaaaaaat-ata----tagttttgatg-ccagtgtgtaattcgataatggtatctcaagatctattgctcttctgcag

upper sequence: LOC_Os05g41930.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G011923_T01 (Zea mays), 5'ss of exon 2
CCAACAAGTGAGATGCTACCAAGGAATGAAGTGCTCGGTGGATATATCTTTGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatcc-------aacttaccttatcttctgaatcatcacttggcatattgttccgagaataaattcatgctgctatttacgatgatcaatatcaaataaccttctgatatataatcatatattgctgttctgcag
|| || || |||||||| || | ||| ||||| || ||||| || |||||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||  |         | ||| || ||||   |||   ||||  ||| | | ||||| |  |   |||   |  || |  |  ||   ||    ||    |||     || |   | |  || | ||||| ||||||||
CCGACGAGCGAGATGCTGCCGAAGAACGAAGTCCTTGGTGGGTACATCTTTGTCTGCAACAACGATACCATGCAGGAGGACCTCAAGAGGCAGCTTTTTGgtatgtctttttttttggatcttgccatatcccttgaggaatcaaatggta-actgttctggaa---aatcagttttgatcctagcgtatatactaatttggtaa-----tggtgccttaagatctgttgctcttctgcag

upper sequence: LOC_Os05g41930.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA19G25870.1 (Glycine max), 5'ss of exon 2
CCAACAAGTGAGATGCTACCAAGGAATGAAGTGCTCGGTGGATATATCTTTGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatccaacttaccttatcttctgaatcatcacttggcatattgttccgagaataaattcatgctgctatttacgatgatcaatatcaaata-accttctgatatataatcatatattgctgttctgcag
||  |    ||||  || ||  | ||||| ||||| || ||||| |||||||| || ||||||||||| |||||||| ||  | ||  | ||||| ||||||  ||      |||||  |||  |  | ||| | ||  |    |  | |   ||  || | || ||       || | |||||   ||      ||    || |||||                          
CCTGCTGCGGAGACACTCCCCCGCAATGAGGTGCTTGGAGGATACATCTTTGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgagt------actta--ttagttattaaatga-catctatttttctatcttgaagatta-ttaatcaaatacttcatgatgactgattctttctatgttttttgatag-------------------------

upper sequence: LOC_Os05g41930.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA16G06100.1 (Glycine max), 5'ss of exon 2
CCAACAAGTGAGATGCTACCAAGGAATGAAGTGCTCGGTGGATATATCTTTGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatccaacttaccttatcttctgaatcatcacttggcatattgttccgagaataaattcatgctgctatttacgatgatcaa-tatcaaataaccttctgatatataatcatatattgctgttctgcag
||  |    ||||  || ||  | ||||| ||||| || ||||| |||||||| || ||||||||||| |||||||| ||  | ||  | ||||| |||||| ||||      ||||  |||  |  | ||| | ||  |    |  | |   ||   | | || ||       || | |||||   | | |   |     || |||||                          
CCTGCTGCGGAGACACTCCCGCGCAATGAGGTGCTTGGAGGATACATCTTTGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgtgtg------ctta--ttagttattaaatga-catctatttttctatcttgaatgtta-ttaatcaaatacttcatgatgactgactctttcaatgttttttgatag-------------------------

upper sequence: LOC_Os05g41930.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AT3G27090.1 (Arabidopsis thaliana), 5'ss of exon 2
CCAACAAGTGAGATGCTACCAAGGAATGAAGTGCTCGGTGGATATATCTTTGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatccaacttaccttatcttctgaatcatcacttggcatattgttccgagaataaattcatgctgctatttacgatgatcaatatcaaataaccttctgatatataatcatatattgctgttctgcag
||  |    ||||  || || ||||||||||| || ||||| || |||||||||||||||||||| || |||||||||||| | ||  | || || |||||||  |  ||| | |  |||| |||  ||  | |    |   || | ||    |  ||||| ||  ||   || |   |  || |||                                               
CCTGCTTCGGAGACTCTTCCGAGGAATGAAGTTCTTGGTGGTTACATCTTTGTTTGCAACAATGATACTATGCAGGAGGATATGAAACGTCACCTCTTTGgtaatt--tcccaatacccttttctagtgttttactgatattcaaactgcaa-gtaaataactttttg--actttcatcattgttcag----------------------------------------------

upper sequence: LOC_Os05g41930.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S6_446V6.1 (Physcomitrella patens), 5'ss of exon 1
CCAACAAGTGAGATGCTACCAAGGAATGAAGTGCTCGGTGGATATATCTTTGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatccaacttaccttatc-ttctgaatcatcacttggcatattgttccgagaataaattcatgctgctatttacg-atgatcaatatcaaataaccttctgatatataatcatatattgctgttctgcag
||| |    ||||| || ||||||||   |    | || || || || ||||| |||||||||||||||||||| ||||| || ||||| || || |||||||||     ||| |      ||| || |   |  |   || |  | |||||      ||| ||  ||     ||| |||  ||  |||| |    |  |     |||                            
CCACCTGCAGAGATCCTTCCAAGGAACACAACCTTGGGAGGCTACATATTTGTGTGCAACAATGACACCATGCAAGAGGACCTGAAGAGACAACTCTTTGgtatgg---tcaattcgtggaatcctttttttttgtttttttgttttttgttt-----atatatatatatatatatatacatatattcaacaaagtagcatgccttga----------------------------

upper sequence: LOC_Os05g41930.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ22023 (Selaginella moellendorffii), 5'ss of exon 1
CCAACAAGTGAGATGCTACCAAGGAATGAAGTGCTCGGTGGATATATCTTTGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatccaacttaccttatcttctgaatcatcacttggcatattgttccgagaataaattcatgctgctatttacgatgatcaatatcaaataaccttctgatatataatcatatattgctgttctgcag
||| |    |||||||||||| ||||||||  ||| ||||| ||||||||||||||||||||||| |||||||| ||||| |||||| | ||||| ||||||| ||  |    ||  | |||| ||||   || |  ||| | |  |    | || |     ||  |  | || ||| || |  |||                                               
CCACCGTCGGAGATGCTACCACGGAATGAAACGCTTGGTGGCTATATCTTTGTTTGCAACAATGATACCATGCAAGAGGACCTCAAGCGCCAGCTCTTTGgtaagtcct----ctctcgttat-ttctctgtc-tttcttcgtagctatgactgaaagcttgtttttttttct-tttgcgctt-tcag----------------------------------------------

upper sequence: LOC_Os05g41930.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ18285 (Selaginella moellendorffii), 5'ss of exon 1
CCAACAAGTGAGATGCTACCAAGGAATGAAGTGCTCGGTGGATATATCTTTGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatccaacttaccttatcttctgaatcatcacttggcatattgttccgagaataaattcatgctgctatttacgatgatcaatatcaaataaccttctgatatataatcatatattgctgttctgcag
||| |    |||||||||||| ||||||||  ||| ||||| ||||||||||||||||||||||| |||||||| ||||| |||||| | ||||| ||||||| ||  ||   ||    || | |||||  |     | | || |||   |  || |     ||  |  |    ||| || |  |||                                               
CCACCGTCGGAGATGCTACCACGGAATGAAACGCTTGGTGGCTATATCTTTGTTTGCAACAATGATACCATGCAAGAGGACCTCAAGCGCCAGCTCTTTGgtaagtcctct--ctcgtttt-ttttctgtctttcttcgtagc-tatgact--gaaagcttgttttttttttcttttgcgctt-tcag----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25800238|gb|CA756199.1|CA756199
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|29676071|gb|CB672346.1|CB672346
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|218501446|gb|FG958594.1|FG958594
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|58668957|gb|CK057643.1|CK057643
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|58694052|gb|CK082739.1|CK082739
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|38470564|gb|CF954695.1|CF954695
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|58679301|gb|CK067988.1|CK067988
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAA
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|29676451|gb|CB672726.1|CB672726
EST:     CAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: CAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|33793317|gb|CF322539.1|CF322539
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGGATTCAGTCCGAGCAATTATTCCTGGTCTA
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTG-ATTCAGTCCGAGCAATTATTCCTGGTCTA
EST: gi|58679924|gb|CK068611.1|CK068611
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|109974438|gb|DT806909.1|DT806909
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|163928377|gb|EG712621.1|EG712621
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|29669163|gb|CB665438.1|CB665438
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|29667743|gb|CB664018.1|CB664018
EST:     AGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGT-CGNAGCAATTATTCCTGGTCTA
genomic: AGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCG-AGCAATTATTCCTGGTCTA
EST: gi|29676329|gb|CB672604.1|CB672604
EST:     AAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: AAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|29675861|gb|CB672136.1|CB672136
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|218502990|gb|FG954156.1|FG954156
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|29642637|gb|CB647644.1|CB647644
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|218500689|gb|FG944959.1|FG944959
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|29617826|gb|CB622838.1|CB622838
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|29642202|gb|CB647209.1|CB647209
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|163928338|gb|EG714682.1|EG714682
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|218481318|gb|FG953310.1|FG953310
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|29657474|gb|CB653749.1|CB653749
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|84117273|gb|CD151040.1|CD151040
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|29618262|gb|CB623274.1|CB623274
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|58610657|gb|CK038369.1|CK038369
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTA
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTA
EST: gi|218479007|gb|FG957145.1|FG957145
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|29675022|gb|CB671297.1|CB671297
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
EST: gi|29673873|gb|CB670148.1|CB670148
EST:     TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTG                         GGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC
genomic: TGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatc ... tgttctgcagGGTTGCCAGCAAGATATCGTGATTCAGTCCGAGCAATTATTCCTGGTCTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAACAAGTGAGATGCTACCAAGGAATGAAGTGCTCGGTGGATATATCTTTGTTTGCAACAATGACACCATGCAGGAGGATCTCAAGAGGCAGCTTTTTGgtatgtgatccaacttaccttatcttctgaatcatcacttggcatattgttccgagaataaattcatgctgctatttacgatgatcaatatcaaataaccttctgatatataatcatatattgctgttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT