1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAAgtaagttcctgtgtatattttgttgtttcaatatgattgtagattgttttagtgcccttttatcctgtgcatgctctaggctatgtagttttttggttaatggtagtaaaaggttaatagcaatgatttaccaatgagtactatttcatatttggaaggtatttcaactattacttttatttttatcctacaggacag
species | Oryza sativa |
transcript | LOC_Os05g40820.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAAGACAEST: gi|33810488|gb|CF331132.1|CF331132
genomic: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCT---GA-Agtaagttcct ... tacagga
EST: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAAGACAEST: gi|396941383|gb|HO188592.1|HO188592
genomic: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCT---GA-Agtaagttcct ... tacagga
EST: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAAGACAEST: gi|396941383|gb|HO188592.1|HO188592
genomic: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCT---GA-Agtaagttcct ... tacagga
EST: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAAGACAEST: gi|5607423|gb|AU076121.1|AU076121
genomic: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCT---GA-Agtaagttcct ... tacagga
EST: -ATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAAGNCAEST: gi|5607423|gb|AU076121.1|AU076121
genomic: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTG-A---Agtaagttcct ... tacagga
EST: -ATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAAGNCAEST: gi|8324524|gb|AU091671.1|AU091671
genomic: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTG-A---Agtaagttcct ... tacagga
EST: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAAGACAEST: gi|8324524|gb|AU091671.1|AU091671
genomic: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCT---GA-Agtaagttcct ... tacagga
EST: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAAGACAEST: gi|88397656|gb|CI684589.1|CI684589
genomic: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCT---GA-Agtaagttcct ... tacagga
EST: AATTCTGTGAGTATTTAAGCTGAGAAGATGGTGCTGAAGACAEST: gi|88397656|gb|CI684589.1|CI684589
genomic: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCT---GA-Agtaagttcct ... tacagga
EST: AATTCTGTGAGTATTTAAGCTGAGAAGATGGTGCTGAAGACA
genomic: AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCT---GA-Agtaagttcct ... tacagga
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAAgtaagttcctgtgtatattttgttgtttcaatatgattgtagattgttttagtgcccttttatcctgtgcatgctctaggctatgtagttttttggttaatggtagtaaaaggttaatagcaatgatttaccaatgagtactatttcatatttggaaggtatttcaactattacttttatttttatcctacaggacag
- - - - GAGGAT
- - - - - - - - AAGCTG
- - - - - - - - AGCTGA
- - - - - - - - - - - - AAGATG