1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTGACCCATTTGATGCTCTGTTGGATTGGGATGAAGGGAACGCCAGCCCCTGTTCTTGGTTCGGTGTGGAGTGCTCGGATGATGGTCGAGTTGTGGCCCTgtaagtttttcacttatgtgcagtaaaagagataggagacccagaaaataacctttctattcatttggaagaaatgaactgccttaactaagctgcgatc...
species | Oryza sativa |
transcript | LOC_Os05g39410.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTTCTTGGTTCGGTGTGGAGTGCTCGGATGATGGTCGAGTTGTGGCCCT GAACTTACCAAATCTTGGTCTAAAGGGTATGCTACCTCAGGAGATTGGAACEST: gi|117235467|gb|CT860740.1|CT860740
genomic: TGTTCTTGGTTCGGTGTGGAGTGCTCGGATGATGGTCGAGTTGTGGCCCTgtaagttttt ... attgttgtagGAACTTACCAAATCTTGGTCTAAAGGGTATGCTACCTCAGGAGATTGGAAC
EST: TGTTCTTGGTTCGGTGTGGAGTGCTCGGATGATGGTCGAGTTGTGGTCCT GAACTTACCAAATCTTGGTCTAAAGGGTATGCTACCTCATGAGATTGGAAC
genomic: TGTTCTTGGTTCGGTGTGGAGTGCTCGGATGATGGTCGAGTTGTGGCCCTgtaagttttt ... attgttgtagGAACTTACCAAATCTTGGTCTAAAGGGTATGCTACCTCAGGAGATTGGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGACCCATTTGATGCTCTGTTGGATTGGGATGAAGGGAACGCCAGCCCCTGTTCTTGGTTCGGTGTGGAGTGCTCGGATGATGGTCGAGTTGTGGCCCTgtaagtttttcacttatgtgcagtaaaagagataggagacccagaaaataacctttctattcatttggaagaaatgaactgccttaactaagctgcgatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa