1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGAACCAGTGACAAAGACAAATTAGGTAGCATTCCAGAGAACTCAGCAGCTGAAGAGGAACTAAATAAAGAAGAGCATCCCAAATTACAAAAGGGCTTGGgtaagcacatgtcaggtcttcaggctattcttttcctttttttggtttgaagtttcattgtttatctttaatatgctggcag
species | Oryza sativa |
transcript | LOC_Os05g38710.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGAAGAGGAACTAAATAAAGAAGAGCATCCCAAATTACCAAAGGGCTTGG GGTTCGAAATTTCTCTTTGTGGGCACATGCTACGGCCAGGAATGGGCCAAGEST: gi|33794006|gb|CF322893.1|CF322893
genomic: TGAAGAGGAACTAAATAAAGAAGAGCATCCCAAATTACAAAAGGGCTTGGgtaagcacat ... atgctggcagGGTTCGAAATTTCTCTTTGTGGGCACATGCTACGGCCAGGAATGGGCCAAG
EST: TGAAGAGGAACTAAATAAAGAAGAGCATCCCAAATTACAAAAGGGCTTGG GGTTCGAAATTTCTCTTTGTGGGCACATGCTACGGCCAGGAATGGGCCAAGEST: gi|58688605|gb|CK077292.1|CK077292
genomic: TGAAGAGGAACTAAATAAAGAAGAGCATCCCAAATTACAAAAGGGCTTGGgtaagcacat ... atgctggcagGGTTCGAAATTTCTCTTTGTGGGCACATGCTACGGCCAGGAATGGGCCAAG
EST: TGAAGAGGAACTAAATAAAGAAGAGCATCCCAAATTACAAAAGGGCTTGG GGTTCGAAATTTCTCTTTGGTGGGCACATGCTEST: gi|29680255|gb|CB676530.1|CB676530
genomic: TGAAGAGGAACTAAATAAAGAAGAGCATCCCAAATTACAAAAGGGCTTGGgtaagcacat ... atgctggcagGGTTCGAAATTTCTCTTTG-TGGGCACATGCT
EST: TGAAGAGGAACTAAATAAAGAAGAGCATCCCAAATTACAAAAGGGCTTGG GGTTCGAAATTTCTCTTTGTGGGCACATGCTACGGCCAGGAATGGGCCAAG
genomic: TGAAGAGGAACTAAATAAAGAAGAGCATCCCAAATTACAAAAGGGCTTGGgtaagcacat ... atgctggcagGGTTCGAAATTTCTCTTTGTGGGCACATGCTACGGCCAGGAATGGGCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAACCAGTGACAAAGACAAATTAGGTAGCATTCCAGAGAACTCAGCAGCTGAAGAGGAACTAAATAAAGAAGAGCATCCCAAATTACAAAAGGGCTTGGgtaagcacatgtcaggtcttcaggctattcttttcctttttttggtttgaagtttcattgtttatctttaatatgctggcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA