1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgcatctgccccccctttcggcttgtgatagtgagtgacaacttagaagatgacttgtatctgatgattagtactatctcctagtatcccaatg...
species | Oryza sativa |
transcript | LOC_Os05g38610.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|87022689|gb|CI293579.1|CI293579
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|33688934|gb|CF317173.1|CF317173
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAGGEST: gi|88579853|gb|CI691844.1|CI691844
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|396941400|gb|HO188609.1|HO188609
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|88355336|gb|CI679042.1|CI679042
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|33692848|gb|CF321087.1|CF321087
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|88586226|gb|CI703916.1|CI703916
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|88737539|gb|CI759420.1|CI759420
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|29682909|gb|CB679184.1|CB679184
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|33820855|gb|CF336232.1|CF336232
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|33678548|gb|CF306787.1|CF306787
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|218504818|gb|FG952248.1|FG952248
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|218500698|gb|FG952590.1|FG952590
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|88338043|gb|CI677027.1|CI677027
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|38473747|gb|CF957879.1|CF957879
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|58585721|gb|CF984029.1|CF984029
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|88311493|gb|CI572549.1|CI572549
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCAGTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|88352776|gb|CI678799.1|CI678799
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|88429206|gb|CI690095.1|CI690095
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|88333877|gb|CI645291.1|CI645291
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|88458357|gb|CI695744.1|CI695744
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGEST: gi|33683273|gb|CF311512.1|CF311512
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
EST: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAG CTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
genomic: CGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgca ... cccctttcagCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGgtaatgcgcatctgccccccctttcggcttgtgatagtgagtgacaacttagaagatgacttgtatctgatgattagtactatctcctagtatcccaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc