Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATGGCTCGGAGGGTGCAGGAGACGGTGTGCAGGCGCGCCCTGTGTATGTAGCGGCTGTCGATCTTGCATgtaagtggaatccttcgcgtattgcaccgtgatcatggaattttttgaatattgcccccctcccctctgcagtttgtagtggtgggaatttaattttgct...

Basic information

species Oryza sativa
transcript LOC_Os05g37120.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g37120.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G141735_T01 (Zea mays), 5'ss of exon 2
TGGATGGCTCGGAGGGTGCAGGAGACGGTGTGCAGGCGCGCCCTGTGTATGTAGCGGCTGTCGATCTTGCATgtaagtgg---aatcc-ttcgcgtattgcaccgtgatcatggaattttttgaatattgcccccctcccctctgcagtttgtagtggtgggaatttaattttgct
||||||   | ||||| | ||||||||||||||||||||  ||||| ||||| || || || ||||| |||||||||| |   | ||| || ||  | |  |    |||||||||||| | |     |        |       |     |  |   |||  ||| | |  |    
TGGATGAGGCAGAGGGCGGAGGAGACGGTGTGCAGGCGCTGCCTGTCTATGTGGCCGCAGTGGATCTCGCATgtaagttgtccagtccatttgctcagtatattccgatcatggaattctatcccagtccatttgatgtgggaagttaccttcatatgtgataatgtgaact----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33675080|gb|CF303319.1|CF303319
EST:     AGACGGTGTGCAGGCGCGCCCTGTGTATGTAGCGGCTGTCGATCTTGCAT                         GTTCTGAAGAGTTCCTGGAGCTTATTAAGAGTGCACTTCTGGCAGCTCTAG
genomic: AGACGGTGTGCAGGCGCGCCCTGTGTATGTAGCGGCTGTCGATCTTGCATgtaagtggaa ... atgtattcagGTTCTGAAGAGTTCCTGGAGCTTATTAAGAGTGCACTTCTGGCAGCTCTAG
EST: gi|33677673|gb|CF305912.1|CF305912
EST:     AGACGGTGTGC-TGCTCGTTCTGTGTATGTAGCGGCTGTCGATCTTGCAT                         GTTCTGAATAGTTCCTGGAGCTTATTAAGAGTGCACTTCTGGCAGCTCTAG
genomic: AGACGGTGTGCAGGCGCGCCCTGTGTATGTAGCGGCTGTCGATCTTGCATgtaagtggaa ... atgtattcagGTTCTGAAGAGTTCCTGGAGCTTATTAAGAGTGCACTTCTGGCAGCTCTAG