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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagtacagattagcagtttatgttttgctacagataagttcagtttctgaaacttgacagtgacactccattcctttctgtgcag

Basic information

species Oryza sativa
transcript LOC_Os05g36270.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g36270.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G322953_T04 (Zea mays), 5'ss of exon 2
GGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagtac---agattagcagtttatgttttgctacagat---aagttcagtttctgaaacttgacagtgacactccattcctttctg--tgcag
|| |||||||| |||||||| || || || |||||||| |||||||| |||||||||||||||||||||||||| ||||  |  |     | | ||       ||       ||||  |   | ||||      |     |||||  || |||||    | ||  ||  |||||
GGCGAGGAGCAAAAGAAGCTGGATGTACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgctctcctacactacatacacatacacccgtacacgtcccaggttctcggcttaggcattgactttggcactctgcgctttcttgcgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33688486|gb|CF316725.1|CF316725
EST:     TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACG                         TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
genomic: TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagt ... ttctgtgcagTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
EST: gi|88354625|gb|CI678668.1|CI678668
EST:     TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACG                         TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
genomic: TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagt ... ttctgtgcagTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
EST: gi|88309089|gb|CI654708.1|CI654708
EST:     TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACG                         TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTC
genomic: TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagt ... ttctgtgcagTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTC
EST: gi|29670800|gb|CB667075.1|CB667075
EST:     TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACG                         TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
genomic: TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagt ... ttctgtgcagTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
EST: gi|33683625|gb|CF311864.1|CF311864
EST:     TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACG                         TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
genomic: TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagt ... ttctgtgcagTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
EST: gi|88332374|gb|CI656243.1|CI656243
EST:     TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACG                         TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
genomic: TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagt ... ttctgtgcagTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
EST: gi|33679306|gb|CF307545.1|CF307545
EST:     TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACG                         TGTGTTCTTGTGTCTGAAG
genomic: TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagt ... ttctgtgcagTGTGTTCTTGTGTCTGAAG
EST: gi|33686898|gb|CF315137.1|CF315137
EST:     TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACG                         TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
genomic: TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagt ... ttctgtgcagTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
EST: gi|33693501|gb|CF321740.1|CF321740
EST:     TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACG                         TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
genomic: TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagt ... ttctgtgcagTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
EST: gi|33684972|gb|CF313211.1|CF313211
EST:     TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACG                         TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
genomic: TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagt ... ttctgtgcagTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
EST: gi|29656833|gb|CB653108.1|CB653108
EST:     TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACG                         TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
genomic: TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagt ... ttctgtgcagTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
EST: gi|88329945|gb|CI652332.1|CI652332
EST:     TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACG                         TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
genomic: TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagt ... ttctgtgcagTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
EST: gi|29644325|gb|CB649332.1|CB649332
EST:     TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACG                         TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
genomic: TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagt ... ttctgtgcagTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
EST: gi|33688998|gb|CF317237.1|CF317237
EST:     TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACG                         TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
genomic: TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagt ... ttctgtgcagTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
EST: gi|29663073|gb|CB659348.1|CB659348
EST:     TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACG                         TGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC
genomic: TGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagt ... ttctgtgcagTGTGTTCTTGTGTCTGAAGAGAACGAGGAGGCCATTATCGTCGACGCTCCC