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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTACTCCGGCAAGGCCCCCAAGGGCGTCCGCAGCAGCTGGATCATGAACGAGTACCGCCTCCCCCCGCCCGCCGCAGACGCCGATCTCTTCTACAAGgtaataattattattggaaccgagaccattgtggaatttggtttcagaagaattaatcatgtgtagctagggtttgggatcgagctcaattttgcagaga...

Basic information

species Oryza sativa
transcript LOC_Os05g34600.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g34600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G147867_T01 (Zea mays), 5'ss of exon 2
CTTCTACTCCGGCAAGGCCCCCAAGGGCGTCCGCAGCAGCTGGATCATGAACGAGTACCGCCTCCCCCCGCCCGCCGCAGACGCCGATCTCTT---CTACAAGgtaataattattattggaaccgagaccattgtggaatttggtttcagaagaa---ttaatcatgtgtagctagggtttgggatcgagctcaattttgcagaga---
   ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||  || | |||||||| |  ||      |||||| |     ||||  |    | |||  |||  ||  ||  ||| ||| ||     |||||  |   | ||  | ||  ||  |          ||  ||       
---CTACTCCGGCAAGGCGCCCAAGGGCGTCCGCAGCAGCTGGATCATGAACGAGTACCGCCTCCCGCCACCACCCACCGACGCCGACCCATTGATTCCCAAGgtga-----attaaggcccacaagattatta-gggcttccgttccagcagtgagcttaattttaatttgcgtgcgtgcggagttcttgcttgcttcccaattccaa

upper sequence: LOC_Os05g34600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G134687_T01 (Zea mays), 5'ss of exon 2
CTTCTACTCCGGCAAGGCCCCCAAGGGCGTCCGCAGCAGCTGGATCATGAACGAGTACCGCCTCCCCCCGCCCGCCGCAGACGCCGATCTCTTC---TACAAGgtaataattattattggaaccgagaccattgtggaatttg-----gtttcagaagaattaatcatgtgtagctagggtttgggatcgagctcaattttgcagaga
   ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || ||  |  | ||||||||||  |||     |||||| |      || |      || |   | |||||| ||       |||||        |    ||    |   |  ||||    ||||  |   | | |      
---CTACTCCGGCAAGGCGCCTAAGGGCGTCCGCAGCAGCTGGATCATGAACGAGTACCGCCTCCCGCCACCACCTACCGACGCCGATCCTTTCATTCCCAAGgtgaggtcagttttaatttgcgtgtggactgtggagttcttgcctgtttcgtcgtcgcttccaattcaaaaaaaatgttttttttcgaaattggtgt-gtg----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58687901|gb|CK076588.1|CK076588
EST:     ACGAGTACCGCCTCCCCCCGCCCGCCGCAGACGCCGATCTCTTCTACAAG                         TCTGAGATCTCGCTCTGCCGCGTCTACAAGCGCTCCGGCATCGACGACGGC
genomic: ACGAGTACCGCCTCCCCCCGCCCGCCGCAGACGCCGATCTCTTCTACAAGgtaataatta ... gatcatgcagTCTGAGATCTCGCTCTGCCGCGTCTACAAGCGCTCCGGCATCGACGACGGC
EST: gi|29658832|gb|CB655107.1|CB655107
EST:     ACGAGTACCGCCTCCCCCCGCCCGCCGCAGACGCCGATCTCTTCTACAAG                         TCTGAGATCTCGCTCTGCCGCGTCTACAAGCGCTCCGGCATCGACGACGGC
genomic: ACGAGTACCGCCTCCCCCCGCCCGCCGCAGACGCCGATCTCTTCTACAAGgtaataatta ... gatcatgcagTCTGAGATCTCGCTCTGCCGCGTCTACAAGCGCTCCGGCATCGACGACGGC
EST: gi|58593793|gb|CF992101.1|CF992101
EST:     ACGAGTACCGCCTCCCCCCGCCCGCCGCAGACGCCGATCTCTTCTACAAG                         TCTGAGATCTCGCTCTGCCGCGTCTACAAGCGCTCCGGCATCGACGACGGC
genomic: ACGAGTACCGCCTCCCCCCGCCCGCCGCAGACGCCGATCTCTTCTACAAGgtaataatta ... gatcatgcagTCTGAGATCTCGCTCTGCCGCGTCTACAAGCGCTCCGGCATCGACGACGGC
EST: gi|29644355|gb|CB649362.1|CB649362
EST:     ACGAGTACCGCCTCCCCCCGCCCGCCGCAGACGCCGATCTCTTCTACAAG                         TCTGAGATCTCGCTCTGCCGCGTCTACAAGCGCTCCGGCATCGACGACGGC
genomic: ACGAGTACCGCCTCCCCCCGCCCGCCGCAGACGCCGATCTCTTCTACAAGgtaataatta ... gatcatgcagTCTGAGATCTCGCTCTGCCGCGTCTACAAGCGCTCCGGCATCGACGACGGC