1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTTAAGGCCCCAGGTCCTGGGTACACGTGCGGGCGTGCTATGATTGTCAGGCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAAgtaagtagctcatctgttgttctttaatgtttaataccaattgctttcattctttgaggaaatgcatttgcagcctaaacaacaattgcatggttgaact...
species | Oryza sativa |
transcript | LOC_Os05g32110.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAA TGACATGGAATGTGEST: gi|66918925|gb|CX105773.1|CX105773
genomic: GCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAAgtaagtagct ... ctgtttgcagTGACATGGAATGTG
EST: GCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAA TGACATGGAATGTGACCTGCACATACTCCCAATTTCTTGCTCAGAAGACTCEST: gi|58686271|gb|CK074958.1|CK074958
genomic: GCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAAgtaagtagct ... ctgtttgcagTGACATGGAATGTGACCTGCACATACTCCCAATTTCTTGCTCAGAAGACTC
EST: GCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAGCCCAAGCTCTAA TGACATGGAATGTGACCTGCACATACTCCCAATTTCTTGCTCAGAAGACTCEST: gi|58654342|gb|CK043022.1|CK043022
genomic: GCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAAgtaagtagct ... ctgtttgcagTGACATGGAATGTGACCTGCACATACTCCCAATTTCTTGCTCAGAAGACTC
EST: GCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAA TGACATGGAATGTGACCTGCACATACTCCCAATTTCTTGCTCAGAAGACTCEST: gi|33676440|gb|CF304679.1|CF304679
genomic: GCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAAgtaagtagct ... ctgtttgcagTGACATGGAATGTGACCTGCACATACTCCCAATTTCTTGCTCAGAAGACTC
EST: GCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAA TGACATGGAATGTGACCTGCACATACTCCCAATTTCTTGCTCAGAAGACTCEST: gi|58660640|gb|CK049320.1|CK049320
genomic: GCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAAgtaagtagct ... ctgtttgcagTGACATGGAATGTGACCTGCACATACTCCCAATTTCTTGCTCAGAAGACTC
EST: GCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAA TGACATGGAATGTGACCTGCACATACTCCCAATTTCTTGCTCAGAAGACTCEST: gi|29684532|gb|CB680807.1|CB680807
genomic: GCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAAgtaagtagct ... ctgtttgcagTGACATGGAATGTGACCTGCACATACTCCCAATTTCTTGCTCAGAAGACTC
EST: GCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAA TGACATGGAATGTGACCTGCACATACTCCCAATTTCTTGCTCAGAAGACTC
genomic: GCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAAgtaagtagct ... ctgtttgcagTGACATGGAATGTGACCTGCACATACTCCCAATTTCTTGCTCAGAAGACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTAAGGCCCCAGGTCCTGGGTACACGTGCGGGCGTGCTATGATTGTCAGGCCTACTAAGTTTTTCACCGGGGATGGGCGCAGAGCAACCCAAGCTCTAAgtaagtagctcatctgttgttctttaatgtttaataccaattgctttcattctttgaggaaatgcatttgcagcctaaacaacaattgcatggttgaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT