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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTTCCTGCTTCTTCCTCCCCCAAGGCGCTCATCTTCCTTTGCCATGgtaggtacacacacatatataatataccgcttgaactctgatcaagttgctaccaacaatcaagaaatcgaaggcctgatcgatccatccattcgtttcg...

Basic information

species Oryza sativa
transcript LOC_Os05g29974.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88342813|gb|CI640146.1|CI640146
EST:     CTGGCTTCCTGCTTCTTCCTCCCCCAAGGCGCTCATCTTCCTTTGCCATG                         GCTACGGCATGGAGGTCAGTGGCTTCATGAAAG
genomic: CTGGCTTCCTGCTTCTTCCTCCCCCAAGGCGCTCATCTTCCTTTGCCATGgtaggtacac ... ttgctttcagGCTACGGCATGGAGGTCAGTGGCTTCATGAAAG
EST: gi|88356078|gb|CI627526.1|CI627526
EST:     CTGGCTTCCTGCTTCTTCCTCCCCCAAGGCGCTCATCTTCCTTTGCCATG                         GCTACGGCATGGAGGTCAGTGGCTTCATGAAAG
genomic: CTGGCTTCCTGCTTCTTCCTCCCCCAAGGCGCTCATCTTCCTTTGCCATGgtaggtacac ... ttgctttcagGCTACGGCATGGAGGTCAGTGGCTTCATGAAAG
EST: gi|88368238|gb|CI575120.1|CI575120
EST:     CTGGCTTCCTGCTTCTTCCTCCCCCAAGGCGCTCATCTTCCTTTGCCATG                         GCTACGGCATGGAGGTCAGTGGCTTCATGAAAG
genomic: CTGGCTTCCTGCTTCTTCCTCCCCCAAGGCGCTCATCTTCCTTTGCCATGgtaggtacac ... ttgctttcagGCTACGGCATGGAGGTCAGTGGCTTCATGAAAG
EST: gi|88760430|gb|CI769986.1|CI769986
EST:     CTGGCTTCCTGCTTCTTCCTCCCCCAAGGCGCTCATCTTCCTTTGCCATG                         GCTACGGCATGGAGGTCAGTGGCTTCATGAAAG
genomic: CTGGCTTCCTGCTTCTTCCTCCCCCAAGGCGCTCATCTTCCTTTGCCATGgtaggtacac ... ttgctttcagGCTACGGCATGGAGGTCAGTGGCTTCATGAAAG
EST: gi|29656345|gb|CB652620.1|CB652620
EST:     CTGGCTTCCTGCTTCTTCCTCCCCCAAGGCGCTCATCTTCCTTTGCCATG                         GCTACGGCATGGAGGTCAGTGGCTTCATGAAAG
genomic: CTGGCTTCCTGCTTCTTCCTCCCCCAAGGCGCTCATCTTCCTTTGCCATGgtaggtacac ... ttgctttcagGCTACGGCATGGAGGTCAGTGGCTTCATGAAAG
EST: gi|88743266|gb|CI766774.1|CI766774
EST:     CTGGCTTCCTGCTTCTTCCTCCCCCAAGGCGCTCATCTTCCTTTGCCATG                         GCTACGGCATGGAGGTCAGTGGCTTCATGAAAG
genomic: CTGGCTTCCTGCTTCTTCCTCCCCCAAGGCGCTCATCTTCCTTTGCCATGgtaggtacac ... ttgctttcagGCTACGGCATGGAGGTCAGTGGCTTCATGAAAG