1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAgtaataaacgcctctcgattttacctttgctattactgtcgtgctcgagttcattattgtctgctttttgctgggtaatggcggtggttttgttatccgt...
species | Oryza sativa |
transcript | LOC_Os05g28280.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACA ATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGEST: gi|58694139|gb|CK082826.1|CK082826
genomic: CTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAgtaataaacg ... tggtgaacagATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTG
EST: GCCG-CGATATCATCAACA ATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGEST: gi|58684684|gb|CK073371.1|CK073371
genomic: GCCGCCGATATCATCAACAgtaataaacg ... tggtgaacagATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTG
EST: CTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACA ATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGEST: gi|58652702|gb|CK041382.1|CK041382
genomic: CTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAgtaataaacg ... tggtgaacagATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTG
EST: CTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACA ATGCTCTTAAGTTGGGGGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGEST: gi|42414329|gb|CK664969.1|CK664969
genomic: CTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAgtaataaacg ... tggtgaacagATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTG
EST: CTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACA ATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGEST: gi|58678661|gb|CK067348.1|CK067348
genomic: CTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAgtaataaacg ... tggtgaacagATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTG
EST: GATATCATCAACA ATGCTCTTAAG-TGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGEST: gi|58605226|gb|CK033259.1|CK033259
genomic: GATATCATCAACAgtaataaacg ... tggtgaacagATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTG
EST: CTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACA ATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTGEST: gi|88721304|gb|CI744603.1|CI744603
genomic: CTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAgtaataaacg ... tggtgaacagATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTG
EST: CTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACA ATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTG
genomic: CTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAgtaataaacg ... tggtgaacagATGCTCTTAAGTTGGTAGTGTCTTTGTGCAAGCCGAAAGCCAAGATTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTCGTCGGACGATGAGGTCAGAGAGGAGAAGGAGCTCGACCTCTCCTCCTCCGACGTCGTCACCAAGTACAAGGACGCCGCCGATATCATCAACAgtaataaacgcctctcgattttacctttgctattactgtcgtgctcgagttcattattgtctgctttttgctgggtaatggcggtggttttgttatccgt
- - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcggtg