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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCgtaattatccagtccatacaacttgctccatttctttcttcctccacttactttttttctactggatctccaatcaccgaattaatgaaaatattgggtgttttacag

Basic information

species Oryza sativa
transcript LOC_Os05g25850.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g25850.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G124455_T01 (Zea mays), 5'ss of exon 2
GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCgtaattatccagtccatacaacttgctccatttctttcttcctccacttactttttttctactggatctccaatcaccgaattaatgaaaatattgggtgttttacag
| ||||| || ||||| ||||| ||||| |||||||||||||| ||||||| ||||  ||  | ||||  || |   ||||     |  | |  || |||||||     | | | ||         || |  ||   ||||||| || ||| |||
GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatcttgttaagacaatatgtt--gtttcaactgtgtttcttttccttttttgt--gtcgttttctgg-----aaaattgtgtggatattggatgctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88355464|gb|CI679182.1|CI679182
EST:     GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC                         GAGGGTGGTGGTGATCCACCA
genomic: GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCgtaattatcc ... tgttttacagGAGGGTGGTGGTGATCCACCA
EST: gi|1632331|gb|C20060.1|C20060
EST:     GCCATGTCAATCATTCGATCTTCTGGAATAACCTNAAGCCTATCAGC                         GAGGGTGGTGGTGATCCACCACAATGCAAAACTT
genomic: GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCgtaattatcc ... tgttttacagGAGGGTGGTGGTGATCCACCACA-TGCAAAACTT
EST: gi|88378960|gb|CI681785.1|CI681785
EST:     GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC                         GAGGGTGGTGGTGATCCAC
genomic: GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCgtaattatcc ... tgttttacagGAGGGTGGTGGTGATCCAC
EST: gi|88364015|gb|CI610359.1|CI610359
EST:     GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC                         GAGGGTGGTGGTGATCCACCAC
genomic: GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCgtaattatcc ... tgttttacagGAGGGTGGTGGTGATCCACCAC
EST: gi|88760673|gb|CI770229.1|CI770229
EST:     GCCATGTCAATCATTCGATCTTCTGGAATACCCTCAAGCCTATCAGC                         GAGGGTGGTGGTGATCCACCACATGCAAAACTTGGCTGGGCCCTTGATGAG
genomic: GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCgtaattatcc ... tgttttacagGAGGGTGGTGGTGATCCACCACATGCAAAACTTGGCTGGGCCATTGATGAG
EST: gi|88569449|gb|CI660624.1|CI660624
EST:     GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC                         GAGGGTGGTGGTG
genomic: GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCgtaattatcc ... tgttttacagGAGGGTGGTGGTG
EST: gi|88334258|gb|CI642503.1|CI642503
EST:     GCCATGTCAATCATTCGATCTTCTGGAATAAC-TCAAGCCTATCAGC                         GAGGGTGGTGGTGATCCACCACATG
genomic: GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCgtaattatcc ... tgttttacagGAGGGTGGTGGTGATCCACCACATG
EST: gi|88573928|gb|CI665697.1|CI665697
EST:     GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGC                         GAGGGTGGTGGTGATCCACCACATGCAAAACTTGGCTGGGCCATTGATGAG
genomic: GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCgtaattatcc ... tgttttacagGAGGGTGGTGGTGATCCACCACATGCAAAACTTGGCTGGGCCATTGATGAG