1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATGTAATTTTTCTTCTGGTCTCATCAAGTTGGGTCACCAACGAGATAGTCGTGCTGCAATATTTGCTGATACAAGAACTGAGTGGATCATTGCTGCTCAGgtgattataataaatagtgtggctttctgtatacatttgtgagaacctatgaacctgtatgacaataattgttttattttgtcag
species | Oryza sativa |
transcript | LOC_Os05g25310.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGCTGCAATATTTGCTGATACAAGAACTGAGTGGATCATTGCTGCTCAG GGATGCTTTCGACAAAATCTAACAGTTGTAACTATCTATGCATCTCTTGGCEST: gi|4714242|gb|AU058209.1|AU058209
genomic: GTGCTGCAATATTTGCTGATACAAGAACTGAGTGGATCATTGCTGCTCAGgtgattataa ... attttgtcagGGATGCTTTCGACAAAATCTAACAGTTGTAACTATCTATGCATCTCTTGGC
EST: GTGCTGCAATATTTGCTGATACAAGAACTGAGTGGATCATTGCTGCTCAG GGATGCTTTCGACAAAATCTAACAGTTGTAACTATCTATGCATCTCTTGGCEST: gi|3763367|gb|AU030119.1|AU030119
genomic: GTGCTGCAATATTTGCTGATACAAGAACTGAGTGGATCATTGCTGCTCAGgtgattataa ... attttgtcagGGATGCTTTCGACAAAATCTAACAGTTGTAACTATCTATGCATCTCTTGGC
EST: CTGCAATATTTGCTGNTACANGAACTGAGTGGATCATTGCTGCTCAG GGATGCTTTCGACAAAATCTAACAGTTGTAACTATCTATNCATCTCTTGGC
genomic: CTGCAATATTTGCTGATACAAGAACTGAGTGGATCATTGCTGCTCAGgtgattataa ... attttgtcagGGATGCTTTCGACAAAATCTAACAGTTGTAACTATCTATGCATCTCTTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTAATTTTTCTTCTGGTCTCATCAAGTTGGGTCACCAACGAGATAGTCGTGCTGCAATATTTGCTGATACAAGAACTGAGTGGATCATTGCTGCTCAGgtgattataataaatagtgtggctttctgtatacatttgtgagaacctatgaacctgtatgacaataattgttttattttgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT