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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGGGGAGAAGGACGCCGACAAGGCGCGGGCGGAGACGACGGAGGGAGCGTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtctcctcctgcgcagttatatttctcgtttttagggtggtgatggatgatttggaacttttggatgcttcccaaaagcttcctgcattgagt...

Basic information

species Oryza sativa
transcript LOC_Os05g19954.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88332716|gb|CI660234.1|CI660234
EST:     GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG                         GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: gi|88689372|gb|CI732948.1|CI732948
EST:     GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG                         GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: gi|88330039|gb|CI652429.1|CI652429
EST:     GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG                         GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: gi|88570006|gb|CI661181.1|CI661181
EST:     GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG                         GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: gi|88691366|gb|CI733949.1|CI733949
EST:     GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG                         GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: gi|33807142|gb|CF329453.1|CF329453
EST:     GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG                         GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: gi|88393631|gb|CI619923.1|CI619923
EST:     GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG                         GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: gi|88288671|gb|CI663460.1|CI663460
EST:     GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG                         GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: gi|88717775|gb|CI741285.1|CI741285
EST:     GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG                         GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: gi|88693267|gb|CI736842.1|CI736842
EST:     GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG                         GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: gi|88316614|gb|CI622860.1|CI622860
EST:     GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG                         GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: gi|88691736|gb|CI733814.1|CI733814
EST:     GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG                         GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: gi|88689634|gb|CI733210.1|CI733210
EST:     GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG                         GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG