1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGAAGTGTTAATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAGgtgagcttgtttgttgcgctgtgtttctttttgtttggagtgctgatgtcgtagtacctcgtactgtaagaatctttcttgaaaaaaaaataaattcgat...
species | Oryza sativa |
transcript | LOC_Os05g12170.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAG GATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAAEST: gi|29671008|gb|CB667283.1|CB667283
genomic: AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAGgtgagcttgt ... atttctacagGATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAA
EST: AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAG GATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAAEST: gi|29664499|gb|CB660774.1|CB660774
genomic: AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAGgtgagcttgt ... atttctacagGATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAA
EST: AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAG GATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAA
genomic: AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAGgtgagcttgt ... atttctacagGATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAAGTGTTAATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAGgtgagcttgtttgttgcgctgtgtttctttttgtttggagtgctgatgtcgtagtacctcgtactgtaagaatctttcttgaaaaaaaaataaattcgat
- - - - - - - - - - - - - - - - - - - - - - AAGGAG