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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCCGGCCGGGTCCGACGTGCAGTCGCTGGCGATGGAGTTCATCATCACCTTCTACCTCATGTTCGTCGTCTCCGGCGTCGCCACCGACAACCGAGCTgtgagtttgatccttctccaaaccattcttgttcttgtacgttttccaaactgtgttcaatgttacctcttccgaactgttccctcgtactagtagtttt...

Basic information

species Oryza sativa
transcript LOC_Os05g11560.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g11560.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G126582_T01 (Zea mays), 5'ss of exon 2
GGCGCCGGCCGGGTCCGACGTGCAGTCGCTGGCGATGGAGTTCATCATCACCTTCTACCTCATGTTCGTCGTCTCCGGCGTCGCCACCGACAACCGAGCTgtgagt-ttgatccttctccaaaccattcttgtt----cttgtacgttttccaaactgtgttcaatgttacctcttccga-actgttccctcgtactagtagtttt
|| ||| ||||| || |||| ||||||||| |   | |||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| |||| || ||     | || |    | |  || ||   |     |  |  | ||    |||   |   |   |  |  | ||||  || | |||  | ||   |       
GGTGCCCGCCGGCTCGGACGCGCAGTCGCTCGTCGTCGAGTTCATCATCTCCTTCAACCTCATGTTCGTCGTCTCCGGCGTCGCCACGGACAACAGAGCCgtaagcgccaaaccatgattatattatactacatgaaattcttctgattgttcaacctcgacgacgatctctccgtccgtcacgggtcctgcttagctgc------

upper sequence: LOC_Os05g11560.2 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv14s0006g01540.t01 (Vitis vinifera), 5'ss of exon 3
GGCGCCGGCCGGGTCCGACGTGCAGTCGCTGGCGATGGAGTTCATCATCACCTTCTACCTCATGTTCGTCGTCTCCGGCGTCGCCACCGACAACCGAGCTgtgagtttgatcctt-ctccaaaccattcttgttcttgtacgttttccaaactgtgttcaatgttacctcttccgaactgttccctcgtactagtagtttt
 |  || ||||| ||  | |  |||||  | |   | ||  ||||||||||||||   |||||||||||| |||||||||| |||||||| |   |||| ||       |  ||  || |   | ||     || ||   |  ||  | |||    || | | |||    ||  |   | ||   |  | |          
TGTTCCTGCCGGATCTCATGGCCAGTCTTTAGTCCTTGAAATCATCATCACCTTCCTACTCATGTTCGTCATCTCCGGCGTTGCCACCGATAGTAGAGCGgtatccaatacactcgcttctttcgatgtacattgttaatctattatctaacaac-ttaagttttaaggttttagtcttttttttttatgcag--------

upper sequence: LOC_Os05g11560.2 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv10s0003g01830.t01 (Vitis vinifera), 5'ss of exon 3
GGCGCCGGCCGGGTCCGACGTGCAGTCGCTGGCGATGGAGTTCATCATCACCTTCTACCTCATGTTCGTCGTCTCCGGCGTCGCCACCGACAACCGAGCTgtgagtttgatccttctccaaaccattcttgttcttgtacgttttccaaactgtgttcaatgttacctcttccgaactgttccctcgtactagtagtttt----------
    ||||| || || ||| |||||||  | |  || |||||||| ||||| |||||||||||||| ||| |||||||||| |||||||||||  |||||||     ||||  |  | |  | | |  |  ||| || |    |||||||     ||  ||  ||| ||| |       |||  |  | | |  ||||||          
TCTTCCGGCAGGCTCGGACTTGCAGTCCTTTGTCATCGAGTTCATAATCACATTCTACCTCATGTTTGTCATCTCCGGCGTTGCCACCGACAATAGAGCTgta----tgattgtagtacttaacctcttcattcatgaa----ttccaaa--agtttttatcctacttctcctctttcattcattaattccaaaagttttatcctactta

upper sequence: LOC_Os05g11560.2 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ36013 (Selaginella moellendorffii), 5'ss of exon 3
GGCGCCGGCCGGGTCCGACGTGCAGTCGCTGGCGATGGAGTTCATCATCACCTTCTACCTCATGTTCGTCGTCTCCGGCGTCGCCACCGACAACCGAGCTgtgagt-ttgatccttctccaaaccattcttgttcttgtacgttttccaaactgtgttcaatgttacctcttccgaactgttccctcgtactagtagtttt
    || || ||   |||  | |||||| |     ||||    |||||||||| |   ||||||||||||||||||| |||||||||||||   ||||| || ||    ||  | ||  |   |  |   ||    | ||   |   | |     ||  |                                         
AATTCCCGCTGGAAGCGATCTCCAGTCGTTCTATCTGGAAGCGATCATCACCTACATTCTCATGTTCGTCGTCTCCGCCGTCGCCACCGACGCTCGAGCGgtaagcgccgacacatcctc--tctgtagatgccgctctaatgtccgcgacgatcgtgtag----------------------------------------