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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCATCAAGTGAGGACGAGATGCGGTTCATTATCCGTCGCGATATACGGAGACGAGGACAAGCCGGCGCTCATCACGTACCCGGACATCGCGTTGAACCgtgagtaacaaccacatctcgtgagattcttggaagacatggtagaattgggaattcatcgatcatatatgattacccatttcttgatttgcatgcag

Basic information

species Oryza sativa
transcript LOC_Os05g10740.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g10740.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G100102_T01 (Zea mays), 5'ss of exon 3
GAGCATCAAGTGAGGACGAGATGCGGTTCATTATCCGTCGCGATATACGGAGACGAGGACAAGCCGGCGCTCATCACGTACCCGGACATCGCGTTGAACCgtgagtaacaaccacatctcgtgagattcttggaagacatggtagaattgggaattcatcgatcatatatgattacccatttcttgatttgcatgcag
|| ||||  |||||||||||||| |||||  |  | || ||  | |||||||||||||||||||| ||||| || |||||||||||  | ||  ||||| || |||     | |    |||     || ||   |  ||  |   |      |   ||| | | |||| |   | |     | |||  |||   ||||
GAACATCTTGTGAGGACGAGATGTGGTTCTGTGACTGTTGCCGTGTACGGAGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACTgtaagtgttgtcga----tcgaagattttttctgattcactgccaagacttaa---cattgtttatatctcgctgctt-cctattggcttgg--gcag

upper sequence: LOC_Os05g10740.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G813363_T01 (Zea mays), 5'ss of exon 2
GAGCATCAAGTGAGGACGAGATGCGGTTCATTATCCGTCGCGATATACGGAGACGAGGACAAGCCGGCGCTCATCACGTACCCGGACATCGCGTTGAACCgtgagtaacaaccacatctcgtgagattcttggaagacatggtagaattgggaattcatcgatcatatatgattacccatttcttgatttgcatg--cag
|| ||||  |||||||||||||| |||||  || |||| ||  | |||||||||||||||||||| ||||| || |||||||||||  | ||  ||||| || |||     | |       |    || ||   |  ||  |   | | |           ||  | ||| ||  | |  |||   ||| || ||  |||
GATCATCTTGTGAGGACGAGATGTGGTTCTGTAACCGTTGCCGTGTACGGAGACGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAACTgtaagtgctgtcgatcgaggattttttttttctgattcactgataactggcatgactgaacattgtttat-atctcgctgttcccaattggcttgggcag

upper sequence: LOC_Os05g10740.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G083635_T01 (Zea mays), 5'ss of exon 1
GAGCATCAAGTGAGGACGAGATGCGGTTCATTATCCGTCGCGATATACGGAGACGAGGACAAGCCGGCGCTCATCACGTACCCGGACATCGCGTTGAACCgtgagtaacaaccacatctcgtgagattcttggaagacatggtagaattgggaattcatcgatcatatatgattacccatttcttgatttgcatgcag
                                          || |||||||| ||||||||||| ||||| || |||||||||||  | ||  ||||  || |||  |  | |      ||    || |  ||     ||  |  | |       ||| | | |||| | | | |    |  | | || |||     
------------------------------------------ATGTACGGAGATGAGGACAAGCCAGCGCTTATAACGTACCCGGATGTAGCTCTGAATTgtaagtgccgtcgat-caaagtttttttttctgattcactgccaagacttaa----cattgtttatatctcactgcttcctattggcttggcag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29643622|gb|CB648629.1|CB648629
EST:     AGACGAGGACAAGCCGGCGCTCATCACGTACCCGGACATCGCGTTGAACC                         ACATGTCCTGCTTCCAAGGATTGCTGTTTTGCCCCGAGGTGGCGTCGCTGC
genomic: AGACGAGGACAAGCCGGCGCTCATCACGTACCCGGACATCGCGTTGAACCgtgagtaaca ... ttgcatgcagACATGTCCTGCTTCCAAGGATTGCTGTTTTGCCCCGAGGTGGCGTCGCTGC